Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 1-546
Cow position: chr19:19661567-19662122 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 146

Conread position: 25-562
Cow position: chr19:35064617-35064097 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 102

Conread position: 42-566
Cow position: chr19:14347586-14348110 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 347
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 10, 98

Conread position: 95-582
Cow position: chr19:42092570-42092100 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 38

Conread position: 170-402
Cow position: chr19:30435923-30436164 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 19

Conread position: 170-582
Cow position: chr19:36478595-36479016 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 178-532
Cow position: chr19:4599791-4600129 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 182-562
Cow position: chr19:21285371-21284987 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 269
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 106, 7

Conread position: 185-561
Cow position: chr19:9387350-9387727 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 140, 11

Conread position: 187-554
Cow position: chr19:40714878-40715227 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 132, 10

Conread position: 188-409
Cow position: chr19:38396553-38396340 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 36, 0

Conread position: 188-413
Cow position: chr19:8839320-8839545 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 44

Conread position: 188-582
Cow position: chr19:20699806-20700202 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 44

Conread position: 189-486
Cow position: chr19:18788386-18788085 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 14

Conread position: 190-433
Cow position: chr19:10786638-10786404 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 235, 7

Conread position: 190-543
Cow position: chr19:36977195-36976836 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 137, 6

Conread position: 190-553
Cow position: chr19:3177829-3178174 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 6

Conread position: 194-483
Cow position: chr19:6556677-6556968 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 189
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 173, 183

Conread position: 195-404
Cow position: chr19:23005640-23005427 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 102, 36

Conread position: 195-430
Cow position: chr19:18786600-18786364 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 64, 38

Conread position: 195-430
Cow position: chr19:23785913-23786151 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 132, 184

Conread position: 195-434
Cow position: chr19:5656385-5656152 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 29

Conread position: 195-439
Cow position: chr19:8033464-8033716 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 37

Conread position: 195-450
Cow position: chr19:38392522-38392784 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 136, 179

Conread position: 195-452
Cow position: chr19:4445895-4445642 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 36

Conread position: 195-452
Cow position: chr19:33912908-33912645 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 130, 36

Conread position: 195-469
Cow position: chr19:33932416-33932146 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 220, 36

Conread position: 195-472
Cow position: chr19:673-942 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 239, 19

Conread position: 195-488
Cow position: chr19:47727843-47727552 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 36

Conread position: 195-543
Cow position: chr19:35741882-35742238 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 244
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 136, 151

Conread position: 195-548
Cow position: chr19:3084482-3084125 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 29

Conread position: 195-558
Cow position: chr19:22765342-22765712 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 36

Conread position: 195-558
Cow position: chr19:31595024-31595392 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 243
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 120, 36

Conread position: 195-566
Cow position: chr19:21198852-21199238 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 250
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 122, 36

Conread position: 195-566
Cow position: chr19:23304769-23304391 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 128, 36

Conread position: 195-571
Cow position: chr19:6515986-6516370 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 125, 34

Conread position: 196-423
Cow position: chr19:26086919-26087148 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 37

Conread position: 196-531
Cow position: chr19:42205664-42205989 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 135, 28

Conread position: 196-566
Cow position: chr19:20671175-20670807 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 255
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 135, 35

Conread position: 196-566
Cow position: chr19:35540030-35540398 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 250
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 94, 107

Conread position: 196-582
Cow position: chr19:30746128-30746528 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 28

Conread position: 196-582
Cow position: chr19:31396164-31395778 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 28

Conread position: 197-531
Cow position: chr19:14592778-14593121 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 134, 27

Conread position: 198-543
Cow position: chr19:33468753-33469097 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 133, 11

Conread position: 201-558
Cow position: chr19:17795627-17795987 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 234
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 130, 28

Conread position: 202-413
Cow position: chr19:16694315-16694100 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 81, 22

Conread position: 202-414
Cow position: chr19:53037421-53037209 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 27

Conread position: 203-433
Cow position: chr19:11171485-11171256 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 128, 28

Conread position: 203-536
Cow position: chr19:41212319-41211989 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 130, 28

Conread position: 203-539
Cow position: chr19:32214538-32214872 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 78

Conread position: 203-542
Cow position: chr19:5552154-5551835 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 96

Conread position: 203-542
Cow position: chr19:24144751-24145092 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 128, 21

Conread position: 204-450
Cow position: chr19:33033712-33033463 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 117, 20

Conread position: 204-480
Cow position: chr19:35782398-35782122 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 127, 20

Conread position: 207-543
Cow position: chr19:30533679-30534004 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 222
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 218, 17

Conread position: 207-565
Cow position: chr19:38340237-38339884 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 241
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 145, 33

Conread position: 207-582
Cow position: chr19:38545735-38546096 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 23

Conread position: 207-582
Cow position: chr19:42465751-42465386 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 24

Conread position: 207-582
Cow position: chr19:42706619-42706251 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 199, 95

Conread position: 208-431
Cow position: chr19:904721-904937 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 16

Conread position: 209-404
Cow position: chr19:18242682-18242494 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 210-573
Cow position: chr19:33685836-33686191 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 248
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 46

Conread position: 212-562
Cow position: chr19:22863920-22863575 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 242
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 115, 19

Conread position: 217-566
Cow position: chr19:26976300-26975968 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 226
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 307, 14

Conread position: 220-578
Cow position: chr19:30052251-30051880 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 90

Conread position: 223-539
Cow position: chr19:6881126-6880803 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 65, 21

Conread position: 223-543
Cow position: chr19:43440915-43441244 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 102, 154

Conread position: 227-429
Cow position: chr19:13129638-13129832 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 198, 47

Conread position: 230-540
Cow position: chr19:1713384-1713065 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 86, 174

Conread position: 231-435
Cow position: chr19:28921584-28921788 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 15

Conread position: 232-484
Cow position: chr19:19241852-19242121 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 99, 12

Conread position: 235-582
Cow position: chr19:28326665-28326315 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 44

Conread position: 244-433
Cow position: chr19:5185477-5185282 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 72, 137

Conread position: 244-557
Cow position: chr19:20292314-20292002 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 121

Conread position: 245-566
Cow position: chr19:22134371-22134053 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 126

Conread position: 254-571
Cow position: chr19:7404599-7404271 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 36

Conread position: 255-582
Cow position: chr19:30452992-30452648 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 30, 9

Conread position: 260-434
Cow position: chr19:48960179-48960359 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 116

Conread position: 270-486
Cow position: chr19:15936636-15936857 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 108

Conread position: 270-534
Cow position: chr19:12107253-12107520 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 40

Conread position: 270-571
Cow position: chr19:3081896-3082191 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 50, 23

Conread position: 300-552
Cow position: chr19:30265153-30264908 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 62

Conread position: 314-538
Cow position: chr19:42274003-42273779 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 331-552
Cow position: chr19:3585358-3585139 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 86, 18

Conread position: 356-582
Cow position: chr19:19991376-19991613 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 5

Conread position: 387-582
Cow position: chr19:31287255-31287051 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 430-582
Cow position: chr19:38396099-38395942 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 61

Show alignments to all cow chromosomes.