Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 1-553
Cow position: chr20:25293193-25293736 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 18

Conread position: 1-557
Cow position: chr20:20360184-20359638 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 363
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 43

Conread position: 1-557
Cow position: chr20:25822853-25823420 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 260

Conread position: 27-485
Cow position: chr20:14679224-14679695 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 316
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 99, 152

Conread position: 31-531
Cow position: chr20:14572723-14572244 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 324
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 393, 96

Conread position: 91-580
Cow position: chr20:4359970-4359512 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 36

Conread position: 99-582
Cow position: chr20:20557961-20557463 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 165-423
Cow position: chr20:37200111-37200365 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 5

Conread position: 176-489
Cow position: chr20:22704048-22704371 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 7, 21

Conread position: 185-511
Cow position: chr20:27977942-27977605 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 47

Conread position: 188-450
Cow position: chr20:5998893-5998638 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 8

Conread position: 188-564
Cow position: chr20:18530219-18530586 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 10, 57

Conread position: 189-553
Cow position: chr20:32578146-32577782 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 7

Conread position: 190-399
Cow position: chr20:23164095-23163893 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 190-433
Cow position: chr20:18413632-18413871 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 141, 6

Conread position: 190-557
Cow position: chr20:6903104-6903458 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 141, 6

Conread position: 190-571
Cow position: chr20:9433377-9433745 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 179, 6

Conread position: 195-404
Cow position: chr20:34202426-34202637 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 135, 36

Conread position: 195-408
Cow position: chr20:31927679-31927464 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 131, 36

Conread position: 195-413
Cow position: chr20:11923462-11923246 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 76

Conread position: 195-413
Cow position: chr20:18185358-18185563 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 195-424
Cow position: chr20:5104655-5104433 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 157, 34

Conread position: 195-489
Cow position: chr20:4205742-4206048 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 138, 36

Conread position: 195-489
Cow position: chr20:9473835-9473538 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 149, 36

Conread position: 195-543
Cow position: chr20:35797385-35797739 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 138, 34

Conread position: 195-547
Cow position: chr20:20471569-20471917 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 220, 69

Conread position: 195-553
Cow position: chr20:13821803-13821439 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 36

Conread position: 195-557
Cow position: chr20:26076864-26077226 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 120, 29

Conread position: 195-566
Cow position: chr20:6096706-6096342 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 241, 36

Conread position: 195-566
Cow position: chr20:40781752-40782114 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 65, 29

Conread position: 195-582
Cow position: chr20:22920381-22919999 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 36

Conread position: 196-520
Cow position: chr20:38123667-38123995 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 77, 34

Conread position: 196-539
Cow position: chr20:8869495-8869158 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 135, 35

Conread position: 197-413
Cow position: chr20:19328181-19328398 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 121, 33

Conread position: 198-469
Cow position: chr20:20312955-20312691 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 234, 33

Conread position: 198-553
Cow position: chr20:7539451-7539082 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 196

Conread position: 198-578
Cow position: chr20:17831628-17831994 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 133, 33

Conread position: 198-578
Cow position: chr20:27843433-27843818 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 33

Conread position: 200-535
Cow position: chr20:7600993-7600655 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 29

Conread position: 200-543
Cow position: chr20:21928682-21929035 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 51

Conread position: 200-552
Cow position: chr20:19265941-19266292 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 131, 31

Conread position: 202-531
Cow position: chr20:23792390-23792723 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 69, 22

Conread position: 203-404
Cow position: chr20:12334169-12334362 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 149, 19

Conread position: 203-448
Cow position: chr20:13048631-13048388 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 130, 21

Conread position: 203-489
Cow position: chr20:14735464-14735745 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 106, 21

Conread position: 203-541
Cow position: chr20:28296077-28296423 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 230
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 128, 28

Conread position: 203-546
Cow position: chr20:40256757-40257103 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 231
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 128, 28

Conread position: 203-561
Cow position: chr20:39405555-39405907 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 99, 30

Conread position: 204-422
Cow position: chr20:12420833-12420614 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 127, 20

Conread position: 204-430
Cow position: chr20:18618427-18618647 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 204-566
Cow position: chr20:40511969-40511603 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 111, 20

Conread position: 206-567
Cow position: chr20:31564179-31563818 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 256
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 171, 64

Conread position: 207-469
Cow position: chr20:23833917-23834184 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 124, 17

Conread position: 207-553
Cow position: chr20:19238640-19238289 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 17

Conread position: 207-562
Cow position: chr20:27001185-27001534 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 63, 17

Conread position: 207-566
Cow position: chr20:20983798-20984145 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 113, 13

Conread position: 207-580
Cow position: chr20:35897309-35897694 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 24

Conread position: 209-564
Cow position: chr20:10759672-10759321 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 140, 22

Conread position: 210-430
Cow position: chr20:39517805-39518020 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 121, 21

Conread position: 213-413
Cow position: chr20:37272516-37272710 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 110, 18

Conread position: 213-582
Cow position: chr20:10687574-10687933 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 248
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 18

Conread position: 215-414
Cow position: chr20:19410570-19410367 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 82, 16

Conread position: 215-518
Cow position: chr20:10850702-10850414 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 291, 19

Conread position: 215-578
Cow position: chr20:32153306-32153678 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 16, 56

Conread position: 221-442
Cow position: chr20:27408071-27407850 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 19

Conread position: 224-566
Cow position: chr20:6602848-6603194 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 83, 92

Conread position: 224-566
Cow position: chr20:34107923-34108258 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 226
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 109, 38

Conread position: 225-434
Cow position: chr20:14471741-14471528 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 106, 45

Conread position: 226-571
Cow position: chr20:8578053-8578412 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 153

Conread position: 228-582
Cow position: chr20:12808802-12809174 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 188, 84

Conread position: 230-422
Cow position: chr20:36207615-36207810 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 101, 122

Conread position: 233-444
Cow position: chr20:11864320-11864103 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 85

Conread position: 243-413
Cow position: chr20:24391806-24391976 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 109, 90

Conread position: 247-413
Cow position: chr20:3321308-3321145 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 55

Conread position: 247-543
Cow position: chr20:31080874-31081168 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 14

Conread position: 247-552
Cow position: chr20:30327371-30327660 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 207, 84

Conread position: 263-569
Cow position: chr20:2683378-2683683 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 109

Conread position: 265-494
Cow position: chr20:35384601-35384833 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 10

Conread position: 268-562
Cow position: chr20:8261758-8262064 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 127

Conread position: 275-555
Cow position: chr20:9267243-9266965 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 90

Conread position: 276-582
Cow position: chr20:17474928-17474610 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 58, 26

Conread position: 278-561
Cow position: chr20:19340006-19339734 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 137, 24

Conread position: 279-573
Cow position: chr20:16585776-16585468 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 245

Conread position: 298-570
Cow position: chr20:13658965-13658683 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 79

Conread position: 302-550
Cow position: chr20:26084098-26083844 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 29, 79

Conread position: 368-571
Cow position: chr20:24644195-24643990 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 122

Show alignments to all cow chromosomes.