Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 1-552
Cow position: chr23:3140423-3140948 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 99

Conread position: 2-580
Cow position: chr23:2436766-2436208 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 113

Conread position: 21-557
Cow position: chr23:37224508-37223970 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 37

Conread position: 22-539
Cow position: chr23:25358296-25358808 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 343
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 104, 111

Conread position: 122-413
Cow position: chr23:4810415-4810709 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 6

Conread position: 146-543
Cow position: chr23:4562579-4562975 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 187, 7

Conread position: 156-448
Cow position: chr23:19538296-19538004 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 76

Conread position: 166-577
Cow position: chr23:21630945-21631343 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 30, 8

Conread position: 177-553
Cow position: chr23:9725503-9725145 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 17

Conread position: 183-510
Cow position: chr23:645058-645385 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 133, 15

Conread position: 187-534
Cow position: chr23:16237529-16237168 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 16, 9

Conread position: 188-553
Cow position: chr23:10415294-10414924 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 8

Conread position: 188-566
Cow position: chr23:20435319-20434951 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 235
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 43

Conread position: 188-578
Cow position: chr23:40526238-40525859 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 37

Conread position: 189-573
Cow position: chr23:792301-791914 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 56

Conread position: 189-582
Cow position: chr23:25408573-25408966 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 7

Conread position: 190-543
Cow position: chr23:19002334-19001979 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 247
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 141, 6

Conread position: 193-413
Cow position: chr23:38854999-38854781 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 9, 39

Conread position: 194-436
Cow position: chr23:3727664-3727417 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 136, 30

Conread position: 195-404
Cow position: chr23:361173-360969 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 16

Conread position: 195-413
Cow position: chr23:10852790-10853007 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 122, 29

Conread position: 195-413
Cow position: chr23:12408773-12408554 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 36

Conread position: 195-423
Cow position: chr23:1605417-1605642 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 139, 36

Conread position: 195-423
Cow position: chr23:21452995-21452766 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 136, 36

Conread position: 195-520
Cow position: chr23:18802535-18802203 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 130, 36

Conread position: 195-556
Cow position: chr23:31607424-31607052 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 9, 102

Conread position: 195-558
Cow position: chr23:344440-344083 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 249
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 136, 36

Conread position: 195-562
Cow position: chr23:20752751-20753114 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 29

Conread position: 195-566
Cow position: chr23:1924095-1923725 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 252
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 120, 32

Conread position: 196-419
Cow position: chr23:14191289-14191514 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 26

Conread position: 196-434
Cow position: chr23:9268329-9268569 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 135, 28

Conread position: 196-543
Cow position: chr23:13514921-13515273 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 220, 28

Conread position: 196-564
Cow position: chr23:5389440-5389809 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 192

Conread position: 197-558
Cow position: chr23:29034053-29034419 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 234
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 134, 36

Conread position: 198-432
Cow position: chr23:16881416-16881186 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 225, 33

Conread position: 198-557
Cow position: chr23:17092747-17092394 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 248
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 74, 33

Conread position: 198-566
Cow position: chr23:6592952-6592596 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 171, 26

Conread position: 201-533
Cow position: chr23:23284890-23285202 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 201-564
Cow position: chr23:17000445-17000815 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 250
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 28

Conread position: 203-426
Cow position: chr23:11473763-11473540 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 21

Conread position: 203-429
Cow position: chr23:29459342-29459119 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 118, 21

Conread position: 203-504
Cow position: chr23:16610064-16609755 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 28

Conread position: 203-533
Cow position: chr23:21394824-21394495 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 25, 103

Conread position: 203-562
Cow position: chr23:9711843-9711488 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 79, 28

Conread position: 203-575
Cow position: chr23:7845033-7845413 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 30

Conread position: 204-405
Cow position: chr23:14662249-14662057 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 204-413
Cow position: chr23:26319164-26319373 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 152, 20

Conread position: 204-433
Cow position: chr23:2259850-2259621 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 20

Conread position: 204-559
Cow position: chr23:24867049-24867415 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 238
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 123, 27

Conread position: 204-566
Cow position: chr23:6995222-6994870 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 234
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 209, 27

Conread position: 206-493
Cow position: chr23:38248649-38248928 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 111, 25

Conread position: 207-401
Cow position: chr23:11564589-11564400 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 6

Conread position: 207-553
Cow position: chr23:5737977-5737622 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 248
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 113, 24

Conread position: 209-564
Cow position: chr23:15872949-15872582 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 248
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 122, 22

Conread position: 210-578
Cow position: chr23:3715518-3715882 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 21

Conread position: 211-434
Cow position: chr23:17606152-17605934 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 60

Conread position: 211-543
Cow position: chr23:5603519-5603195 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 20, 87

Conread position: 212-484
Cow position: chr23:670375-670650 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 12

Conread position: 212-527
Cow position: chr23:7063752-7063442 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 99, 42

Conread position: 212-543
Cow position: chr23:40862094-40862435 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 119, 19

Conread position: 212-566
Cow position: chr23:16700284-16699929 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 103, 19

Conread position: 212-582
Cow position: chr23:7322042-7321680 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 12

Conread position: 213-564
Cow position: chr23:13359576-13359936 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 33, 11

Conread position: 214-426
Cow position: chr23:5706756-5706962 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 20

Conread position: 215-566
Cow position: chr23:1398278-1397926 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 9

Conread position: 220-553
Cow position: chr23:11068984-11069311 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 84

Conread position: 221-449
Cow position: chr23:35254475-35254245 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 149

Conread position: 224-505
Cow position: chr23:615145-614850 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 16

Conread position: 227-554
Cow position: chr23:30307677-30308008 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 93, 30

Conread position: 231-524
Cow position: chr23:2531567-2531277 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 192
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 206, 64

Conread position: 244-479
Cow position: chr23:18902265-18902026 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 134

Conread position: 244-578
Cow position: chr23:21659723-21660070 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 228
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 178

Conread position: 253-553
Cow position: chr23:20172999-20173282 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 78, 118

Conread position: 254-539
Cow position: chr23:1663484-1663763 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 169, 5

Conread position: 260-557
Cow position: chr23:35177120-35177422 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 91

Conread position: 261-484
Cow position: chr23:30773877-30773656 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 157

Conread position: 267-484
Cow position: chr23:15505725-15505932 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 167, 78

Conread position: 274-564
Cow position: chr23:40651646-40651362 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 99

Conread position: 275-542
Cow position: chr23:27290965-27290693 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 149

Conread position: 277-550
Cow position: chr23:18963911-18963652 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 139, 56

Conread position: 283-556
Cow position: chr23:1767650-1767931 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 292-582
Cow position: chr23:7252902-7253196 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 20

Conread position: 296-553
Cow position: chr23:10845058-10844796 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 24

Conread position: 333-575
Cow position: chr23:30745708-30745447 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 349-514
Cow position: chr23:13647521-13647352 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 135

Conread position: 380-582
Cow position: chr23:8737916-8737698 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 428-582
Cow position: chr23:5265538-5265380 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 126, 114

Show alignments to all cow chromosomes.