Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 146-547
Cow position: chr24:39742491-39742881 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 270
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 173, 8

Conread position: 154-547
Cow position: chr24:17412408-17412793 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 43

Conread position: 157-557
Cow position: chr24:25111876-25112274 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 275
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 32

Conread position: 174-553
Cow position: chr24:30696013-30695629 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 22, 81

Conread position: 185-413
Cow position: chr24:43733672-43733900 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 132, 12

Conread position: 187-490
Cow position: chr24:14337439-14337745 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 25, 9

Conread position: 188-413
Cow position: chr24:15057107-15057330 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 28

Conread position: 188-524
Cow position: chr24:43176203-43176534 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 229, 51

Conread position: 188-551
Cow position: chr24:21093755-21093404 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 258
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 128, 8

Conread position: 188-551
Cow position: chr24:25245753-25246108 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 188-558
Cow position: chr24:32668980-32669333 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 190

Conread position: 188-564
Cow position: chr24:34369302-34368923 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 44

Conread position: 190-425
Cow position: chr24:39500575-39500337 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 141, 6

Conread position: 190-438
Cow position: chr24:27341316-27341065 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 136, 7

Conread position: 190-539
Cow position: chr24:8021284-8021609 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 6

Conread position: 190-555
Cow position: chr24:11839886-11840262 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 242
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 16, 6

Conread position: 190-566
Cow position: chr24:27290585-27290957 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 162, 7

Conread position: 190-566
Cow position: chr24:33944115-33944487 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 125, 6

Conread position: 193-564
Cow position: chr24:28349293-28349659 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 53

Conread position: 195-404
Cow position: chr24:41985688-41985910 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 29

Conread position: 195-413
Cow position: chr24:42007458-42007669 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 157, 34

Conread position: 195-413
Cow position: chr24:44041298-44041082 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 154, 114

Conread position: 195-423
Cow position: chr24:33153494-33153715 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 195-424
Cow position: chr24:27052780-27052554 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 120, 25

Conread position: 195-429
Cow position: chr24:211693-211930 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 136, 29

Conread position: 195-480
Cow position: chr24:20862244-20861960 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 190
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 109, 29

Conread position: 195-485
Cow position: chr24:38643348-38643636 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 234, 29

Conread position: 195-487
Cow position: chr24:6341879-6342186 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 195-544
Cow position: chr24:18485288-18484932 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 124, 36

Conread position: 195-548
Cow position: chr24:26846566-26846192 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 131, 29

Conread position: 195-557
Cow position: chr24:25677746-25678100 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 36

Conread position: 195-563
Cow position: chr24:18970780-18970425 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 157, 36

Conread position: 195-582
Cow position: chr24:35836528-35836140 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 38

Conread position: 196-440
Cow position: chr24:16909352-16909597 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 135, 64

Conread position: 196-534
Cow position: chr24:32054382-32054719 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 8, 112

Conread position: 196-561
Cow position: chr24:32205083-32204715 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 19, 37

Conread position: 197-451
Cow position: chr24:26929235-26928977 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 27

Conread position: 198-413
Cow position: chr24:40129840-40130056 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 102, 26

Conread position: 198-434
Cow position: chr24:29027764-29027996 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 218, 26

Conread position: 203-414
Cow position: chr24:6914044-6913835 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 124, 28

Conread position: 203-422
Cow position: chr24:20874396-20874618 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 128, 28

Conread position: 203-521
Cow position: chr24:28028985-28028667 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 21

Conread position: 203-551
Cow position: chr24:37386620-37386278 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 212, 21

Conread position: 204-423
Cow position: chr24:27941287-27941070 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 123, 27

Conread position: 204-426
Cow position: chr24:24250453-24250670 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 204-437
Cow position: chr24:3430456-3430686 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 27

Conread position: 204-539
Cow position: chr24:7030432-7030092 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 159, 19

Conread position: 204-554
Cow position: chr24:32759049-32758688 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 253
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 27

Conread position: 207-406
Cow position: chr24:6665758-6665556 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 124, 13

Conread position: 207-448
Cow position: chr24:28062669-28062915 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 79, 24

Conread position: 207-510
Cow position: chr24:38002018-38001708 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 98, 148

Conread position: 207-520
Cow position: chr24:30545132-30544826 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 123, 24

Conread position: 207-562
Cow position: chr24:30860361-30860716 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 24

Conread position: 207-578
Cow position: chr24:39607830-39607479 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 208-413
Cow position: chr24:37876961-37877163 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 121, 16

Conread position: 208-429
Cow position: chr24:2402649-2402423 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 28

Conread position: 208-566
Cow position: chr24:25229332-25228978 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 16

Conread position: 209-486
Cow position: chr24:40091849-40091570 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 108

Conread position: 209-537
Cow position: chr24:35529649-35529972 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 122, 22

Conread position: 210-520
Cow position: chr24:16476134-16476446 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 14

Conread position: 214-467
Cow position: chr24:43448865-43448623 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 214-508
Cow position: chr24:14913801-14913517 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 202, 10

Conread position: 223-413
Cow position: chr24:18075888-18076076 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 22

Conread position: 223-520
Cow position: chr24:30900489-30900188 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 88

Conread position: 228-564
Cow position: chr24:23824673-23824338 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 115

Conread position: 231-465
Cow position: chr24:27207448-27207210 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 91, 71

Conread position: 235-539
Cow position: chr24:6061648-6061338 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 197
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 81, 226

Conread position: 237-431
Cow position: chr24:10498963-10499160 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 137

Conread position: 244-557
Cow position: chr24:27054160-27054488 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 222

Conread position: 245-539
Cow position: chr24:33730615-33730891 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 83

Conread position: 245-543
Cow position: chr24:31324041-31324347 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 197
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 69, 15

Conread position: 246-553
Cow position: chr24:31786937-31786645 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 170, 94

Conread position: 253-582
Cow position: chr24:28067528-28067847 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 78, 43

Conread position: 266-553
Cow position: chr24:9786255-9786564 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 145

Conread position: 273-562
Cow position: chr24:18787130-18786843 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 19

Conread position: 279-571
Cow position: chr24:12572317-12572625 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 187

Conread position: 293-566
Cow position: chr24:24457441-24457165 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 82

Conread position: 330-575
Cow position: chr24:16055649-16055417 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 332-557
Cow position: chr24:26455688-26455918 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 102, 196

Conread position: 332-582
Cow position: chr24:6177250-6177503 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 48

Conread position: 333-582
Cow position: chr24:40040991-40040745 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 91, 32

Conread position: 338-541
Cow position: chr24:41405462-41405252 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 32

Conread position: 338-582
Cow position: chr24:16476574-16476822 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 32

Conread position: 351-582
Cow position: chr24:42817129-42817367 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 56

Conread position: 369-580
Cow position: chr24:28440475-28440694 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 385-541
Cow position: chr24:36173054-36173216 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 117

Show alignments to all cow chromosomes.