Cow genome map
| Conread name: | rgul0117_o20.y1 |
| Conread position: | 1-432 |
| Cow position: | chr27:15201100-15200684 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 132 |
| Conread position: | 79-413 |
| Cow position: | chr27:12597099-12596768 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 85-553 |
| Cow position: | chr27:9159529-9159068 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 148-553 |
| Cow position: | chr27:11672277-11671870 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 9 |
| Conread position: | 152-413 |
| Cow position: | chr27:28038078-28038338 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 175, 14 |
| Conread position: | 158-573 |
| Cow position: | chr27:27234279-27233857 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 177-564 |
| Cow position: | chr27:29038701-29039093 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 278 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 185-405 |
| Cow position: | chr27:30582969-30582750 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 186-547 |
| Cow position: | chr27:16784985-16784623 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 122 |
| Conread position: | 187-413 |
| Cow position: | chr27:17473040-17472812 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 129, 10 |
| Conread position: | 188-413 |
| Cow position: | chr27:23483449-23483230 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 188-573 |
| Cow position: | chr27:31251098-31251476 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 189-442 |
| Cow position: | chr27:8942456-8942709 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 43 |
| Conread position: | 190-413 |
| Cow position: | chr27:11723680-11723903 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 164, 6 |
| Conread position: | 190-564 |
| Cow position: | chr27:13006058-13005698 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 191-404 |
| Cow position: | chr27:13252235-13252018 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 191-561 |
| Cow position: | chr27:22418542-22418914 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 36 |
| Conread position: | 192-566 |
| Cow position: | chr27:26581224-26581590 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 193-404 |
| Cow position: | chr27:2682921-2683132 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 150, 27 |
| Conread position: | 194-511 |
| Cow position: | chr27:26653526-26653210 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 195-429 |
| Cow position: | chr27:491107-490885 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 195-429 |
| Cow position: | chr27:31230874-31231100 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 195-432 |
| Cow position: | chr27:7971790-7971553 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 121, 29 |
| Conread position: | 195-450 |
| Cow position: | chr27:30856171-30856418 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 165, 36 |
| Conread position: | 195-535 |
| Cow position: | chr27:10980084-10979739 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 36 |
| Conread position: | 195-547 |
| Cow position: | chr27:6454433-6454072 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 195-563 |
| Cow position: | chr27:21393284-21393658 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 154, 29 |
| Conread position: | 195-564 |
| Cow position: | chr27:21139045-21138679 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 195-564 |
| Cow position: | chr27:26440838-26441199 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 195-582 |
| Cow position: | chr27:27737711-27738102 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 196-425 |
| Cow position: | chr27:20510406-20510183 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 210, 35 |
| Conread position: | 196-469 |
| Cow position: | chr27:27259827-27259557 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 198-415 |
| Cow position: | chr27:22771975-22771752 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 198-429 |
| Cow position: | chr27:4673238-4673006 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 198-520 |
| Cow position: | chr27:26427911-26428240 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 199-426 |
| Cow position: | chr27:17397233-17397461 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 200-564 |
| Cow position: | chr27:8430224-8430590 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 201-566 |
| Cow position: | chr27:21977923-21978292 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 202-560 |
| Cow position: | chr27:30561125-30560779 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 203-429 |
| Cow position: | chr27:16871707-16871925 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 203-460 |
| Cow position: | chr27:23882162-23882422 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 203-510 |
| Cow position: | chr27:16550684-16550381 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 203-539 |
| Cow position: | chr27:17924097-17924415 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 203-557 |
| Cow position: | chr27:24342116-24341760 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 203-562 |
| Cow position: | chr27:29019534-29019882 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 203-563 |
| Cow position: | chr27:26300051-26299693 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 203-582 |
| Cow position: | chr27:12246872-12246483 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 204-483 |
| Cow position: | chr27:6523257-6522973 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 204-539 |
| Cow position: | chr27:8589291-8589646 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 27 |
| Conread position: | 206-582 |
| Cow position: | chr27:1141826-1142209 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 207-413 |
| Cow position: | chr27:11762531-11762731 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 207-434 |
| Cow position: | chr27:6074124-6073902 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 207-534 |
| Cow position: | chr27:25471349-25471019 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 207-553 |
| Cow position: | chr27:30698417-30698759 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 207-578 |
| Cow position: | chr27:19577882-19577504 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 208-557 |
| Cow position: | chr27:19543702-19544065 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 157, 23 |
| Conread position: | 208-566 |
| Cow position: | chr27:30989009-30988644 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 209-558 |
| Cow position: | chr27:28293376-28293015 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 212-430 |
| Cow position: | chr27:27055781-27055562 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 212-581 |
| Cow position: | chr27:30573048-30573416 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 220, 19 |
| Conread position: | 221-433 |
| Cow position: | chr27:20592178-20591962 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 221-582 |
| Cow position: | chr27:25676421-25676055 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 223-562 |
| Cow position: | chr27:23659147-23659472 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 258, 79 |
| Conread position: | 224-516 |
| Cow position: | chr27:20012418-20012703 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 195, 78 |
| Conread position: | 225-423 |
| Cow position: | chr27:26413064-26413260 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 225-449 |
| Cow position: | chr27:6037314-6037092 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 90 |
| Conread position: | 226-562 |
| Cow position: | chr27:14937238-14937578 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 171, 84 |
| Conread position: | 231-540 |
| Cow position: | chr27:10997688-10997400 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 232-558 |
| Cow position: | chr27:26220737-26220419 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 184, 101 |
| Conread position: | 244-423 |
| Cow position: | chr27:27550575-27550749 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 244-566 |
| Cow position: | chr27:6160154-6159831 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 246-550 |
| Cow position: | chr27:156264-156559 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 170, 49 |
| Conread position: | 249-548 |
| Cow position: | chr27:23600433-23600137 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 253-541 |
| Cow position: | chr27:23662441-23662721 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 101 |
| Conread position: | 260-582 |
| Cow position: | chr27:30888734-30889067 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 261-582 |
| Cow position: | chr27:4007090-4007431 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 291-553 |
| Cow position: | chr27:3934559-3934824 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 303-550 |
| Cow position: | chr27:18569576-18569330 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 330-578 |
| Cow position: | chr27:5530839-5530580 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 331-557 |
| Cow position: | chr27:24509901-24509674 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 341-553 |
| Cow position: | chr27:9261907-9261690 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 358-553 |
| Cow position: | chr27:4234216-4234414 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.