Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 31-423
Cow position: chr28:24997016-24996620 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 88

Conread position: 151-433
Cow position: chr28:8084389-8084679 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 79

Conread position: 153-577
Cow position: chr28:7606926-7607363 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 166-430
Cow position: chr28:5129017-5128756 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 23, 69

Conread position: 177-573
Cow position: chr28:9177031-9176635 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 275
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 55

Conread position: 178-554
Cow position: chr28:3493058-3492681 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 9

Conread position: 184-543
Cow position: chr28:33051751-33052129 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 128, 34

Conread position: 185-551
Cow position: chr28:30370524-30370888 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 266
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 40

Conread position: 187-426
Cow position: chr28:16204599-16204357 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 17

Conread position: 188-454
Cow position: chr28:7590446-7590178 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 14

Conread position: 188-535
Cow position: chr28:10744943-10745299 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 8, 44

Conread position: 188-543
Cow position: chr28:25563813-25564176 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 139, 14

Conread position: 188-558
Cow position: chr28:19026269-19025898 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 44

Conread position: 190-451
Cow position: chr28:23231328-23231071 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 137, 6

Conread position: 190-542
Cow position: chr28:16350305-16349952 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 250
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 225, 6

Conread position: 190-562
Cow position: chr28:23007990-23007620 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 254
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 41, 6

Conread position: 192-536
Cow position: chr28:16686772-16687112 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 258, 21

Conread position: 192-567
Cow position: chr28:480683-480316 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 263
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 10, 33

Conread position: 195-408
Cow position: chr28:5768936-5769154 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 29

Conread position: 195-411
Cow position: chr28:10669316-10669532 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 29

Conread position: 195-413
Cow position: chr28:17738337-17738115 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 130, 36

Conread position: 195-418
Cow position: chr28:26784725-26784501 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 120, 36

Conread position: 195-430
Cow position: chr28:3914452-3914687 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 120, 35

Conread position: 195-433
Cow position: chr28:12619304-12619547 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 138, 36

Conread position: 195-450
Cow position: chr28:10534187-10533937 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 120, 35

Conread position: 195-489
Cow position: chr28:17287966-17288254 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 193
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 247, 36

Conread position: 195-491
Cow position: chr28:30978024-30978312 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 231, 29

Conread position: 195-520
Cow position: chr28:7549320-7548989 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 138, 29

Conread position: 195-543
Cow position: chr28:23621290-23621629 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 237
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 132, 29

Conread position: 195-566
Cow position: chr28:26743364-26743741 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 259
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 165, 29

Conread position: 196-408
Cow position: chr28:11451724-11451508 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 97, 35

Conread position: 196-429
Cow position: chr28:28163837-28164061 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 196-437
Cow position: chr28:8787293-8787523 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 135, 35

Conread position: 196-554
Cow position: chr28:2814756-2814406 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 134, 35

Conread position: 196-573
Cow position: chr28:32300617-32300233 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 260
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 120, 35

Conread position: 196-578
Cow position: chr28:6486337-6486727 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 7

Conread position: 197-486
Cow position: chr28:12942129-12942417 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 203, 27

Conread position: 197-519
Cow position: chr28:34208453-34208777 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 34

Conread position: 197-564
Cow position: chr28:20963788-20963416 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 91, 27

Conread position: 198-403
Cow position: chr28:9294759-9294963 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 133, 11

Conread position: 203-412
Cow position: chr28:34150781-34150569 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 128, 28

Conread position: 203-423
Cow position: chr28:2862611-2862833 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 128, 28

Conread position: 203-452
Cow position: chr28:15263975-15263719 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 123, 28

Conread position: 203-458
Cow position: chr28:11687283-11687022 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 128, 26

Conread position: 203-559
Cow position: chr28:13693499-13693857 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 128, 67

Conread position: 203-580
Cow position: chr28:13936166-13936529 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 229, 28

Conread position: 204-437
Cow position: chr28:5203953-5204176 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 216, 26

Conread position: 204-449
Cow position: chr28:14493293-14493531 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 27

Conread position: 204-557
Cow position: chr28:23675895-23676244 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 238
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 237, 20

Conread position: 204-563
Cow position: chr28:21873523-21873870 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 27

Conread position: 204-582
Cow position: chr28:34636429-34636801 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 27

Conread position: 206-557
Cow position: chr28:11006928-11007306 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 252
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 125, 357

Conread position: 207-413
Cow position: chr28:17625380-17625173 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 17

Conread position: 207-413
Cow position: chr28:28414424-28414632 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 111, 27

Conread position: 207-437
Cow position: chr28:5904490-5904714 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 17

Conread position: 207-444
Cow position: chr28:8022357-8022120 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 24

Conread position: 207-573
Cow position: chr28:25796870-25797242 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 89, 24

Conread position: 208-443
Cow position: chr28:14649102-14649338 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 86, 110

Conread position: 208-557
Cow position: chr28:14508612-14508263 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 232
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 222, 94

Conread position: 208-562
Cow position: chr28:11501137-11500774 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 112, 23

Conread position: 208-582
Cow position: chr28:2340286-2340672 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 16

Conread position: 209-539
Cow position: chr28:13902203-13901888 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 105, 22

Conread position: 210-582
Cow position: chr28:33697873-33698244 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 111, 5

Conread position: 212-553
Cow position: chr28:13725921-13726265 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 18

Conread position: 213-433
Cow position: chr28:4914342-4914116 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 92, 18

Conread position: 215-418
Cow position: chr28:28076646-28076446 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 132, 19

Conread position: 215-582
Cow position: chr28:20265151-20265537 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 9

Conread position: 216-565
Cow position: chr28:14555284-14555612 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 226
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 336, 15

Conread position: 217-426
Cow position: chr28:23775809-23776017 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 114, 12

Conread position: 223-413
Cow position: chr28:9285609-9285415 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 108, 151

Conread position: 223-541
Cow position: chr28:25826102-25825773 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 93, 290

Conread position: 223-558
Cow position: chr28:17362810-17362495 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 224-519
Cow position: chr28:34430657-34430355 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 195
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 103, 151

Conread position: 224-531
Cow position: chr28:4375415-4375113 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 96, 101

Conread position: 227-413
Cow position: chr28:5658326-5658510 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 62

Conread position: 230-539
Cow position: chr28:12226485-12226163 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 66

Conread position: 231-582
Cow position: chr28:10674464-10674799 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 233-552
Cow position: chr28:6277762-6277449 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 183, 92

Conread position: 239-582
Cow position: chr28:21939980-21940313 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 143

Conread position: 245-557
Cow position: chr28:15082134-15081816 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 82, 6

Conread position: 246-547
Cow position: chr28:10035192-10035482 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 76, 31

Conread position: 250-582
Cow position: chr28:26627351-26627007 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 81, 48

Conread position: 259-414
Cow position: chr28:19564019-19563862 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 5

Conread position: 264-547
Cow position: chr28:21569997-21570286 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 53

Conread position: 269-550
Cow position: chr28:7345348-7345629 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 161, 64

Conread position: 286-582
Cow position: chr28:22829762-22830061 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 8, 88

Conread position: 292-511
Cow position: chr28:23352403-23352635 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 39, 176

Conread position: 293-564
Cow position: chr28:4763714-4763991 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 122, 247

Conread position: 301-582
Cow position: chr28:16487146-16487436 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 70

Conread position: 330-554
Cow position: chr28:23668909-23668678 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 126

Conread position: 362-582
Cow position: chr28:16466529-16466755 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 5

Conread position: 376-578
Cow position: chr28:23028295-23028506 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 79, 39

Conread position: 381-582
Cow position: chr28:19961792-19962003 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 75

Conread position: 416-564
Cow position: chr28:20275094-20275241 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 100

Show alignments to all cow chromosomes.