Cow genome map

Conread name: rgul0117_o20.y1

Conread position: 1-582
Cow position: chr29:32809010-32809568 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 62

Conread position: 2-493
Cow position: chr29:42268239-42268732 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 3-539
Cow position: chr29:16662632-16663174 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 54

Conread position: 11-551
Cow position: chr29:477655-478201 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 25

Conread position: 30-561
Cow position: chr29:2984467-2984993 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 343
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 142, 30

Conread position: 39-450
Cow position: chr29:2623895-2623491 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 266
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 87, 94

Conread position: 50-553
Cow position: chr29:30812360-30812844 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 79

Conread position: 147-574
Cow position: chr29:24604463-24604021 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 295
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 91

Conread position: 167-438
Cow position: chr29:29769639-29769374 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 13

Conread position: 169-414
Cow position: chr29:16082840-16083082 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 27, 12

Conread position: 172-564
Cow position: chr29:4367435-4367832 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 159, 19

Conread position: 177-423
Cow position: chr29:19338698-19338949 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 154, 13

Conread position: 180-461
Cow position: chr29:34736746-34736469 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 191
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 23, 45

Conread position: 185-433
Cow position: chr29:26616005-26615751 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 11, 127

Conread position: 185-503
Cow position: chr29:21534954-21534627 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 11, 46

Conread position: 186-426
Cow position: chr29:4480447-4480207 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 50

Conread position: 186-539
Cow position: chr29:7750147-7749808 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 238, 10

Conread position: 187-539
Cow position: chr29:7959790-7959444 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 238
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 37, 32

Conread position: 188-459
Cow position: chr29:603579-603316 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 205, 10

Conread position: 188-566
Cow position: chr29:40299285-40298912 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 25, 55

Conread position: 188-571
Cow position: chr29:13634573-13634185 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 44

Conread position: 188-582
Cow position: chr29:2481598-2481210 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 37

Conread position: 190-425
Cow position: chr29:5977390-5977148 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 128, 6

Conread position: 194-440
Cow position: chr29:39111574-39111336 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 222, 37

Conread position: 194-549
Cow position: chr29:43963787-43963441 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 238, 37

Conread position: 195-408
Cow position: chr29:36216853-36217064 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 120, 29

Conread position: 195-410
Cow position: chr29:4120581-4120797 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 29

Conread position: 195-418
Cow position: chr29:3502796-3503009 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 195-419
Cow position: chr29:17607151-17607373 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 36

Conread position: 195-434
Cow position: chr29:17109705-17109941 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 220, 108

Conread position: 195-532
Cow position: chr29:38247010-38246667 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 29

Conread position: 195-566
Cow position: chr29:28195784-28195413 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 260
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 126

Conread position: 195-571
Cow position: chr29:24952421-24952798 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 257
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 136, 29

Conread position: 195-582
Cow position: chr29:133927-134303 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 266
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 222, 120

Conread position: 196-490
Cow position: chr29:12005028-12004730 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 143, 28

Conread position: 196-533
Cow position: chr29:11365983-11366314 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 226
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 201, 28

Conread position: 196-582
Cow position: chr29:18338810-18338414 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 35

Conread position: 197-432
Cow position: chr29:26673166-26672936 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 27

Conread position: 197-557
Cow position: chr29:32644651-32645010 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 250
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 61, 17

Conread position: 199-564
Cow position: chr29:650014-650380 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 256
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 132, 11

Conread position: 202-562
Cow position: chr29:13553875-13554240 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 129, 7

Conread position: 203-404
Cow position: chr29:37292520-37292722 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 28

Conread position: 203-485
Cow position: chr29:11071961-11071679 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 85, 28

Conread position: 203-525
Cow position: chr29:11634565-11634891 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 131, 28

Conread position: 203-539
Cow position: chr29:26224090-26224411 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 216, 28

Conread position: 203-553
Cow position: chr29:1576492-1576149 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 213, 21

Conread position: 203-555
Cow position: chr29:21924953-21925289 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 232
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 21

Conread position: 203-558
Cow position: chr29:2885704-2885353 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 253
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 215, 28

Conread position: 203-578
Cow position: chr29:17965700-17966089 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 99

Conread position: 204-405
Cow position: chr29:20429229-20429024 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 118, 20

Conread position: 204-439
Cow position: chr29:44135717-44135483 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 114, 20

Conread position: 204-440
Cow position: chr29:32963298-32963535 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 123, 27

Conread position: 204-510
Cow position: chr29:19601593-19601308 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 205-564
Cow position: chr29:32655679-32655329 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 253
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 92, 15

Conread position: 205-582
Cow position: chr29:2589143-2588764 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 19

Conread position: 207-553
Cow position: chr29:42205254-42205589 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 212, 17

Conread position: 209-538
Cow position: chr29:22957585-22957265 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 114, 22

Conread position: 211-582
Cow position: chr29:16359364-16359750 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 20

Conread position: 212-549
Cow position: chr29:34757782-34758113 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 194, 90

Conread position: 212-564
Cow position: chr29:22895468-22895833 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 19

Conread position: 215-418
Cow position: chr29:32767766-32767566 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 19

Conread position: 215-424
Cow position: chr29:19254069-19253858 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 100, 158

Conread position: 217-519
Cow position: chr29:7828714-7828400 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 114, 13

Conread position: 222-449
Cow position: chr29:42886142-42886372 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 9

Conread position: 223-534
Cow position: chr29:11787554-11787879 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 27, 46

Conread position: 223-554
Cow position: chr29:39023576-39023242 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 176, 83

Conread position: 223-582
Cow position: chr29:6472077-6472437 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 109, 69

Conread position: 224-437
Cow position: chr29:22714965-22714748 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 103, 154

Conread position: 224-448
Cow position: chr29:19508723-19508939 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 224-543
Cow position: chr29:22778422-22778088 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 223
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 154

Conread position: 224-562
Cow position: chr29:29302891-29302555 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 107, 30

Conread position: 224-582
Cow position: chr29:17339535-17339176 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 103

Conread position: 225-538
Cow position: chr29:29694803-29695101 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 87, 0

Conread position: 227-553
Cow position: chr29:31488633-31488958 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 68

Conread position: 230-553
Cow position: chr29:22455025-22454731 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 30

Conread position: 231-542
Cow position: chr29:868542-868859 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 89, 142

Conread position: 237-582
Cow position: chr29:14034551-14034202 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 124, 73

Conread position: 245-578
Cow position: chr29:8906304-8906656 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 86, 0

Conread position: 249-557
Cow position: chr29:10154003-10153697 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 169

Conread position: 252-547
Cow position: chr29:709332-709044 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 43

Conread position: 272-434
Cow position: chr29:7392905-7393073 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 278-557
Cow position: chr29:25924155-25923863 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 262

Conread position: 284-553
Cow position: chr29:798574-798300 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 41

Conread position: 308-571
Cow position: chr29:9512716-9512992 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 0

Conread position: 330-531
Cow position: chr29:35036602-35036809 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 89, 46

Conread position: 330-553
Cow position: chr29:14113355-14113558 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 353-535
Cow position: chr29:13653118-13653314 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 353-582
Cow position: chr29:14032349-14032115 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 182

Conread position: 361-582
Cow position: chr29:18880515-18880289 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 65, 12

Show alignments to all cow chromosomes.