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Cow genome map

           
Conread name:
           
rgul0117_o20.y1
        

               
Conread position:
               
1-564
               

               
Cow position:
               
chr3:48630054-48629505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
419, 102
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chr3:55444888-55445461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-539
               

               
Cow position:
               
chr3:46135367-46134841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
21-563
               

               
Cow position:
               
chr3:37451615-37452150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 99
               

               
Conread position:
               
30-539
               

               
Cow position:
               
chr3:40753709-40754201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
31-557
               

               
Cow position:
               
chr3:54862859-54862342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
196, 67
               

               
Conread position:
               
31-566
               

               
Cow position:
               
chr3:3984871-3985408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr3:73467184-73467703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
66-553
               

               
Cow position:
               
chr3:53510094-53509621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
153-540
               

               
Cow position:
               
chr3:23092317-23091916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
157-557
               

               
Cow position:
               
chr3:64172120-64172517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
161-564
               

               
Cow position:
               
chr3:15655471-15655062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
170, 45
               

               
Conread position:
               
175-539
               

               
Cow position:
               
chr3:16622337-16621974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
177-562
               

               
Cow position:
               
chr3:58865762-58865393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
182-413
               

               
Cow position:
               
chr3:34937541-34937773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 39
               

               
Conread position:
               
185-567
               

               
Cow position:
               
chr3:38346904-38347277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
185-571
               

               
Cow position:
               
chr3:17935219-17934846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
244, 11
               

               
Conread position:
               
186-562
               

               
Cow position:
               
chr3:23476704-23477071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
186-566
               

               
Cow position:
               
chr3:5101055-5100686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
188-413
               

               
Cow position:
               
chr3:3457624-3457849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
188-426
               

               
Cow position:
               
chr3:15057893-15057666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
188-547
               

               
Cow position:
               
chr3:42480329-42480685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 33
               

               
Conread position:
               
188-566
               

               
Cow position:
               
chr3:53588683-53588299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
188-582
               

               
Cow position:
               
chr3:36927421-36927058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
188-582
               

               
Cow position:
               
chr3:42594951-42594545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
188-582
               

               
Cow position:
               
chr3:44254722-44254332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
189-539
               

               
Cow position:
               
chr3:73826799-73827118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
231, 7
               

               
Conread position:
               
189-541
               

               
Cow position:
               
chr3:26554006-26553654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
189-563
               

               
Cow position:
               
chr3:58350294-58350654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
190-539
               

               
Cow position:
               
chr3:40231638-40231962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
190-553
               

               
Cow position:
               
chr3:49337438-49337793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
190-562
               

               
Cow position:
               
chr3:66738482-66738839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
192-416
               

               
Cow position:
               
chr3:32399545-32399322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
194-563
               

               
Cow position:
               
chr3:4223027-4223381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
195-404
               

               
Cow position:
               
chr3:69961998-69961793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
195-408
               

               
Cow position:
               
chr3:16547389-16547603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
195-413
               

               
Cow position:
               
chr3:43658002-43657778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
195-437
               

               
Cow position:
               
chr3:27274253-27274483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
195-439
               

               
Cow position:
               
chr3:34316251-34316005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
136, 36
               

               
Conread position:
               
195-486
               

               
Cow position:
               
chr3:42563163-42563465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 263
               

               
Conread position:
               
195-505
               

               
Cow position:
               
chr3:72530892-72531198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 140
               

               
Conread position:
               
195-520
               

               
Cow position:
               
chr3:72473620-72473955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
195-535
               

               
Cow position:
               
chr3:66610125-66609791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
220, 36
               

               
Conread position:
               
195-539
               

               
Cow position:
               
chr3:7467022-7466705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
195-539
               

               
Cow position:
               
chr3:34953367-34953701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
221, 36
               

               
Conread position:
               
195-541
               

               
Cow position:
               
chr3:80655172-80655503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
195-546
               

               
Cow position:
               
chr3:48252610-48252951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
195-552
               

               
Cow position:
               
chr3:70754078-70754430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
195-553
               

               
Cow position:
               
chr3:60174758-60174413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 128
               

               
Conread position:
               
195-554
               

               
Cow position:
               
chr3:24531548-24531897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
195-554
               

               
Cow position:
               
chr3:39554604-39554260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
195-557
               

               
Cow position:
               
chr3:37186549-37186903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
220, 29
               

               
Conread position:
               
195-558
               

               
Cow position:
               
chr3:23408629-23408280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
195-562
               

               
Cow position:
               
chr3:23111791-23111432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 36
               

               
Conread position:
               
195-562
               

               
Cow position:
               
chr3:27532949-27532574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 36
               

               
Conread position:
               
195-582
               

               
Cow position:
               
chr3:58206738-58206343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
196-406
               

               
Cow position:
               
chr3:42461414-42461624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
196-430
               

               
Cow position:
               
chr3:62826909-62826672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
196-437
               

               
Cow position:
               
chr3:66116398-66116156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
196-534
               

               
Cow position:
               
chr3:38497666-38497983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
196-545
               

               
Cow position:
               
chr3:68342540-68342184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
196-561
               

               
Cow position:
               
chr3:33633172-33632828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
196-566
               

               
Cow position:
               
chr3:48241335-48241700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
229, 35
               

               
Conread position:
               
196-566
               

               
Cow position:
               
chr3:55272326-55271959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
228, 21
               

               
Conread position:
               
196-566
               

               
Cow position:
               
chr3:80053820-80053457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
229, 28
               

               
Conread position:
               
196-582
               

               
Cow position:
               
chr3:19689941-19689538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
129, 8
               

               
Conread position:
               
196-582
               

               
Cow position:
               
chr3:52722283-52721902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
220, 35
               

               
Conread position:
               
197-410
               

               
Cow position:
               
chr3:11640149-11640360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
197-419
               

               
Cow position:
               
chr3:49327659-49327877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
197-440
               

               
Cow position:
               
chr3:13899738-13899491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
197-452
               

               
Cow position:
               
chr3:7858067-7858337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
197-469
               

               
Cow position:
               
chr3:50768394-50768668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr3:8060845-8061204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
197-561
               

               
Cow position:
               
chr3:59205956-59206317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
198-413
               

               
Cow position:
               
chr3:16810075-16809855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
198-470
               

               
Cow position:
               
chr3:46013239-46012965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
198-539
               

               
Cow position:
               
chr3:68291282-68291616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 33
               

               
Conread position:
               
198-543
               

               
Cow position:
               
chr3:53150043-53150394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
198-547
               

               
Cow position:
               
chr3:40345116-40345476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
202-556
               

               
Cow position:
               
chr3:58130720-58131071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
202-564
               

               
Cow position:
               
chr3:66708351-66707983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
202-566
               

               
Cow position:
               
chr3:57624183-57624550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr3:32869870-32870078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr3:42588070-42588287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr3:70130091-70129881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
203-413
               

               
Cow position:
               
chr3:82473773-82473988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
203-428
               

               
Cow position:
               
chr3:17284557-17284790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
203-434
               

               
Cow position:
               
chr3:69750980-69750752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 96
               

               
Conread position:
               
203-486
               

               
Cow position:
               
chr3:22170910-22171197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
203-486
               

               
Cow position:
               
chr3:73776999-73777281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
203-511
               

               
Cow position:
               
chr3:8753185-8753491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
203-521
               

               
Cow position:
               
chr3:74699674-74699341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
203-535
               

               
Cow position:
               
chr3:56637387-56637718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
203-543
               

               
Cow position:
               
chr3:80564684-80565029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
203-557
               

               
Cow position:
               
chr3:26493503-26493154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
203-566
               

               
Cow position:
               
chr3:80581392-80581741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
149, 21
               

               
Conread position:
               
203-578
               

               
Cow position:
               
chr3:35511509-35511888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 28
               

               
Conread position:
               
203-582
               

               
Cow position:
               
chr3:11326630-11326264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
203-582
               

               
Cow position:
               
chr3:23477956-23478334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
203-582
               

               
Cow position:
               
chr3:42489585-42489194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
203-582
               

               
Cow position:
               
chr3:67044374-67043992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
204-413
               

               
Cow position:
               
chr3:56704132-56703924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
204-443
               

               
Cow position:
               
chr3:18184790-18185033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
204-535
               

               
Cow position:
               
chr3:77224842-77225172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
204-554
               

               
Cow position:
               
chr3:82460905-82461253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
113, 70
               

               
Conread position:
               
204-555
               

               
Cow position:
               
chr3:5096925-5097282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
135, 168
               

               
Conread position:
               
204-557
               

               
Cow position:
               
chr3:36100550-36100911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
204-582
               

               
Cow position:
               
chr3:55460779-55460392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
205-578
               

               
Cow position:
               
chr3:77467656-77468051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 276
               

               
Conread position:
               
207-404
               

               
Cow position:
               
chr3:56102163-56102357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
207-434
               

               
Cow position:
               
chr3:3738216-3738438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
207-448
               

               
Cow position:
               
chr3:51227880-51228132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
52, 226
               

               
Conread position:
               
207-458
               

               
Cow position:
               
chr3:81473729-81473992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
207-557
               

               
Cow position:
               
chr3:8457382-8457731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 6
               

               
Conread position:
               
207-562
               

               
Cow position:
               
chr3:29507321-29507662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
207-570
               

               
Cow position:
               
chr3:66649717-66649346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
207-577
               

               
Cow position:
               
chr3:51598109-51598473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
207-582
               

               
Cow position:
               
chr3:73417247-73417622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
208-408
               

               
Cow position:
               
chr3:15158767-15158967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
208-452
               

               
Cow position:
               
chr3:76188419-76188659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
211, 93
               

               
Conread position:
               
208-554
               

               
Cow position:
               
chr3:20471633-20471291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
206, 16
               

               
Conread position:
               
208-558
               

               
Cow position:
               
chr3:54945851-54946209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
210-541
               

               
Cow position:
               
chr3:70899628-70899953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
219, 21
               

               
Conread position:
               
214-404
               

               
Cow position:
               
chr3:70913347-70913156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
215-484
               

               
Cow position:
               
chr3:52690873-52691130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
215-548
               

               
Cow position:
               
chr3:73236499-73236834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 107
               

               
Conread position:
               
215-564
               

               
Cow position:
               
chr3:33327436-33327793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
97, 133
               

               
Conread position:
               
215-564
               

               
Cow position:
               
chr3:36204285-36204636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
119, 5
               

               
Conread position:
               
215-566
               

               
Cow position:
               
chr3:59473845-59474208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
217-533
               

               
Cow position:
               
chr3:80818464-80818771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
222-542
               

               
Cow position:
               
chr3:54881496-54881829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
223-521
               

               
Cow position:
               
chr3:78546357-78546073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 163
               

               
Conread position:
               
224-432
               

               
Cow position:
               
chr3:31907404-31907194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
224-489
               

               
Cow position:
               
chr3:14625647-14625381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
225-444
               

               
Cow position:
               
chr3:8604272-8604054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
225-582
               

               
Cow position:
               
chr3:11357902-11357552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
225-582
               

               
Cow position:
               
chr3:11422489-11422840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
226-566
               

               
Cow position:
               
chr3:18686660-18686992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
192, 7
               

               
Conread position:
               
226-577
               

               
Cow position:
               
chr3:3690980-3690626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
230-581
               

               
Cow position:
               
chr3:80084429-80084072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 58
               

               
Conread position:
               
231-420
               

               
Cow position:
               
chr3:74233943-74234127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
231-521
               

               
Cow position:
               
chr3:18217017-18216724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
231-541
               

               
Cow position:
               
chr3:49414676-49414388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
235-530
               

               
Cow position:
               
chr3:43233255-43233557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
96, 144
               

               
Conread position:
               
235-554
               

               
Cow position:
               
chr3:55992120-55991794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
6, 220
               

               
Conread position:
               
235-578
               

               
Cow position:
               
chr3:18352083-18351759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
244-429
               

               
Cow position:
               
chr3:12705798-12705601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
244-582
               

               
Cow position:
               
chr3:80929190-80928835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 151
               

               
Conread position:
               
245-566
               

               
Cow position:
               
chr3:71135550-71135874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 251
               

               
Conread position:
               
251-555
               

               
Cow position:
               
chr3:74561638-74561349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
257-520
               

               
Cow position:
               
chr3:26960821-26960548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 118
               

               
Conread position:
               
257-528
               

               
Cow position:
               
chr3:82703307-82703576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 41
               

               
Conread position:
               
260-490
               

               
Cow position:
               
chr3:61913377-61913601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
260-553
               

               
Cow position:
               
chr3:56711858-56711566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
261-563
               

               
Cow position:
               
chr3:2198660-2198964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
264-517
               

               
Cow position:
               
chr3:6963525-6963783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
269-582
               

               
Cow position:
               
chr3:77448851-77449165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 62
               

               
Conread position:
               
274-540
               

               
Cow position:
               
chr3:55777824-55778096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
283-508
               

               
Cow position:
               
chr3:50713746-50713970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
298-562
               

               
Cow position:
               
chr3:53091311-53091568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
301-553
               

               
Cow position:
               
chr3:2226905-2227154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
305-578
               

               
Cow position:
               
chr3:27634196-27633911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
308-578
               

               
Cow position:
               
chr3:42490648-42490360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
309-578
               

               
Cow position:
               
chr3:64688386-64688099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
342-546
               

               
Cow position:
               
chr3:40629925-40629716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 114
               

               
Conread position:
               
343-553
               

               
Cow position:
               
chr3:6799118-6798892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 212
               

               
Conread position:
               
357-554
               

               
Cow position:
               
chr3:14506042-14505841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 173
               

               
Conread position:
               
367-578
               

               
Cow position:
               
chr3:32773097-32773305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
385-582
               

               
Cow position:
               
chr3:43292161-43291961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
421-553
               

               
Cow position:
               
chr3:83698035-83697903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
438-553
               

               
Cow position:
               
chr3:3896663-3896549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               
Show alignments to all cow chromosomes.