Cow genome map
| Conread name: | rgul0117_o20.y1 |
| Conread position: | 1-562 |
| Cow position: | chr5:26045906-26046453 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 1-566 |
| Cow position: | chr5:43991899-43992460 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 2-582 |
| Cow position: | chr5:63174103-63173524 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 154 |
| Conread position: | 45-401 |
| Cow position: | chr5:39049075-39049419 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 77, 112 |
| Conread position: | 51-552 |
| Cow position: | chr5:50900528-50901030 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 58-533 |
| Cow position: | chr5:58144971-58144497 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 59-469 |
| Cow position: | chr5:37714267-37713855 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 217, 66 |
| Conread position: | 156-413 |
| Cow position: | chr5:55176609-55176869 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 174-538 |
| Cow position: | chr5:41636613-41636975 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 177-487 |
| Cow position: | chr5:48144047-48143727 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 181-553 |
| Cow position: | chr5:51076899-51076522 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 171 |
| Conread position: | 184-448 |
| Cow position: | chr5:9083089-9083357 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 143, 12 |
| Conread position: | 184-516 |
| Cow position: | chr5:65776635-65776299 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 143, 34 |
| Conread position: | 184-582 |
| Cow position: | chr5:26561902-26562298 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 192 |
| Conread position: | 186-413 |
| Cow position: | chr5:30639098-30638883 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 186-535 |
| Cow position: | chr5:328428-328084 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 188-426 |
| Cow position: | chr5:21828622-21828858 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 188-429 |
| Cow position: | chr5:4797555-4797321 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 188-430 |
| Cow position: | chr5:47601571-47601815 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 188-441 |
| Cow position: | chr5:1398331-1398071 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 188-484 |
| Cow position: | chr5:28927837-28927531 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 143, 8 |
| Conread position: | 188-489 |
| Cow position: | chr5:458226-458548 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 188-520 |
| Cow position: | chr5:55967129-55966790 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 188-553 |
| Cow position: | chr5:25927937-25927572 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 188-564 |
| Cow position: | chr5:41604365-41604757 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 188-567 |
| Cow position: | chr5:58855858-58856239 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 189-539 |
| Cow position: | chr5:31913097-31913455 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 189-553 |
| Cow position: | chr5:14832852-14832492 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 42 |
| Conread position: | 190-413 |
| Cow position: | chr5:51315090-51314868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 191-433 |
| Cow position: | chr5:30253502-30253739 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 191-553 |
| Cow position: | chr5:15882723-15882344 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 301 |
| Conread position: | 194-431 |
| Cow position: | chr5:40388105-40387877 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 194-539 |
| Cow position: | chr5:55985789-55985420 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 195-413 |
| Cow position: | chr5:14538887-14538679 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 195-413 |
| Cow position: | chr5:52165420-52165199 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 195-414 |
| Cow position: | chr5:6045048-6045271 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 195-414 |
| Cow position: | chr5:21944143-21944377 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 195-424 |
| Cow position: | chr5:60519928-60520152 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 195-426 |
| Cow position: | chr5:50533622-50533395 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 136, 101 |
| Conread position: | 195-433 |
| Cow position: | chr5:6086800-6086560 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 136, 49 |
| Conread position: | 195-433 |
| Cow position: | chr5:65924937-65924692 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 195-434 |
| Cow position: | chr5:18113813-18113574 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 195-437 |
| Cow position: | chr5:6986920-6987165 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 36 |
| Conread position: | 195-438 |
| Cow position: | chr5:30816477-30816722 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 195-469 |
| Cow position: | chr5:39094315-39094589 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 195-488 |
| Cow position: | chr5:45940845-45940551 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 211, 69 |
| Conread position: | 195-514 |
| Cow position: | chr5:42096382-42096706 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 195-539 |
| Cow position: | chr5:43738186-43737854 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 136, 22 |
| Conread position: | 195-540 |
| Cow position: | chr5:18276240-18276591 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 195-544 |
| Cow position: | chr5:56433563-56433918 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 195-553 |
| Cow position: | chr5:21167364-21167009 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 195-557 |
| Cow position: | chr5:27419959-27419602 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 195-558 |
| Cow position: | chr5:57935352-57934980 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 195-564 |
| Cow position: | chr5:17027860-17028229 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 195-566 |
| Cow position: | chr5:35826352-35826738 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 195-568 |
| Cow position: | chr5:48573999-48573636 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 36 |
| Conread position: | 196-413 |
| Cow position: | chr5:27690296-27690080 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 196-413 |
| Cow position: | chr5:43329930-43329714 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 48 |
| Conread position: | 196-434 |
| Cow position: | chr5:30276458-30276699 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 196-534 |
| Cow position: | chr5:48535569-48535902 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 133 |
| Conread position: | 196-564 |
| Cow position: | chr5:26595340-26594965 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 196-564 |
| Cow position: | chr5:28946296-28945926 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 35 |
| Conread position: | 196-582 |
| Cow position: | chr5:23647243-23646860 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 197-434 |
| Cow position: | chr5:20554985-20554746 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 109, 32 |
| Conread position: | 197-503 |
| Cow position: | chr5:12803260-12803589 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 122, 5 |
| Conread position: | 198-582 |
| Cow position: | chr5:61030464-61030061 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 203-412 |
| Cow position: | chr5:33467271-33467064 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 203-413 |
| Cow position: | chr5:45036790-45037000 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 203-413 |
| Cow position: | chr5:66831944-66831734 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 203-413 |
| Cow position: | chr5:69773341-69773546 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 117, 21 |
| Conread position: | 203-543 |
| Cow position: | chr5:6561348-6561667 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 214, 36 |
| Conread position: | 203-566 |
| Cow position: | chr5:26990163-26990524 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 230, 30 |
| Conread position: | 204-413 |
| Cow position: | chr5:65933157-65932949 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 204-414 |
| Cow position: | chr5:3824869-3825067 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 204-414 |
| Cow position: | chr5:27154793-27155004 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 204-494 |
| Cow position: | chr5:26099599-26099314 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 204-533 |
| Cow position: | chr5:46122578-46122250 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 204-562 |
| Cow position: | chr5:27615285-27615643 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 207-429 |
| Cow position: | chr5:34922061-34921840 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 159, 24 |
| Conread position: | 207-511 |
| Cow position: | chr5:57126789-57127095 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 207-562 |
| Cow position: | chr5:34183991-34184354 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 24, 239 |
| Conread position: | 207-562 |
| Cow position: | chr5:41598924-41598581 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 199, 16 |
| Conread position: | 207-582 |
| Cow position: | chr5:52437923-52438304 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 23 |
| Conread position: | 208-432 |
| Cow position: | chr5:72891976-72891758 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 208-531 |
| Cow position: | chr5:35209697-35209375 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 208-534 |
| Cow position: | chr5:72172798-72173129 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 208-543 |
| Cow position: | chr5:44848242-44847908 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 154, 23 |
| Conread position: | 209-557 |
| Cow position: | chr5:27411614-27411274 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 209-578 |
| Cow position: | chr5:25225873-25225488 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 22 |
| Conread position: | 209-578 |
| Cow position: | chr5:37425519-37425896 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 15 |
| Conread position: | 211-578 |
| Cow position: | chr5:54111696-54112062 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 212-566 |
| Cow position: | chr5:16025682-16025332 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 214-555 |
| Cow position: | chr5:39442073-39442422 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 138 |
| Conread position: | 217-388 |
| Cow position: | chr5:66281009-66280837 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 114, 87 |
| Conread position: | 220-413 |
| Cow position: | chr5:35235922-35235730 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 220-539 |
| Cow position: | chr5:504123-503820 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 221-402 |
| Cow position: | chr5:14512899-14513086 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 222-541 |
| Cow position: | chr5:11427453-11427121 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 223-414 |
| Cow position: | chr5:34678680-34678872 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 224-530 |
| Cow position: | chr5:40039981-40039670 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 95, 147 |
| Conread position: | 226-566 |
| Cow position: | chr5:4280255-4280584 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 189, 86 |
| Conread position: | 226-582 |
| Cow position: | chr5:23753434-23753065 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 154 |
| Conread position: | 227-452 |
| Cow position: | chr5:7044918-7044689 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 151 |
| Conread position: | 230-564 |
| Cow position: | chr5:6896331-6895993 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 104, 186 |
| Conread position: | 231-489 |
| Cow position: | chr5:27492270-27492542 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 231-564 |
| Cow position: | chr5:1688316-1687981 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 95, 103 |
| Conread position: | 231-571 |
| Cow position: | chr5:64758967-64758626 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 236-554 |
| Cow position: | chr5:35603781-35604094 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 169, 112 |
| Conread position: | 237-534 |
| Cow position: | chr5:34420118-34419819 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 125 |
| Conread position: | 238-558 |
| Cow position: | chr5:4220783-4221106 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 6, 142 |
| Conread position: | 244-429 |
| Cow position: | chr5:46294857-46294669 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 244-433 |
| Cow position: | chr5:4322220-4322407 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 244-553 |
| Cow position: | chr5:25900060-25899751 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 247-557 |
| Cow position: | chr5:31561348-31561662 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 250-566 |
| Cow position: | chr5:46512951-46512633 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 252-391 |
| Cow position: | chr5:66281229-66281369 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 252-564 |
| Cow position: | chr5:54089855-54090169 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 253-543 |
| Cow position: | chr5:55928761-55929057 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 62, 105 |
| Conread position: | 254-580 |
| Cow position: | chr5:34167780-34168112 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 256-578 |
| Cow position: | chr5:63159854-63160201 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 201 |
| Conread position: | 260-543 |
| Cow position: | chr5:62638731-62639017 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 265-489 |
| Cow position: | chr5:56317125-56317352 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 106 |
| Conread position: | 269-486 |
| Cow position: | chr5:73526212-73526427 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 269-553 |
| Cow position: | chr5:34218423-34218146 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 273-564 |
| Cow position: | chr5:37068730-37069017 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 275-562 |
| Cow position: | chr5:16214528-16214818 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 279-554 |
| Cow position: | chr5:33265602-33265343 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 283-553 |
| Cow position: | chr5:51952223-51952502 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 283-562 |
| Cow position: | chr5:58748611-58748900 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 179 |
| Conread position: | 284-538 |
| Cow position: | chr5:10460908-10461166 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 290-557 |
| Cow position: | chr5:39874977-39875251 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 304-564 |
| Cow position: | chr5:18553768-18554026 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 307-557 |
| Cow position: | chr5:4927693-4927439 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 308-553 |
| Cow position: | chr5:34483665-34483410 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 333-557 |
| Cow position: | chr5:21535215-21534984 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 345-543 |
| Cow position: | chr5:73458742-73458936 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 347-582 |
| Cow position: | chr5:60968319-60968565 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 348-581 |
| Cow position: | chr5:40270941-40271183 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 354-519 |
| Cow position: | chr5:38970599-38970769 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 362-582 |
| Cow position: | chr5:27175794-27176019 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 129 |
| Conread position: | 373-561 |
| Cow position: | chr5:47836485-47836679 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 385-553 |
| Cow position: | chr5:61017350-61017182 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 91 |
Show alignments to all cow chromosomes.