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Cow genome map

           
Conread name:
           
rhea09_e18.y1
        

               
Conread position:
               
15-389
               

               
Cow position:
               
chr11:37778486-37778875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
33-390
               

               
Cow position:
               
chr11:45849185-45849545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
44-325
               

               
Cow position:
               
chr11:12349963-12350234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
86-318
               

               
Cow position:
               
chr11:42183292-42183058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
88-315
               

               
Cow position:
               
chr11:81340292-81340511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
98-361
               

               
Cow position:
               
chr11:41123348-41123617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
101-311
               

               
Cow position:
               
chr11:12768639-12768432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
103-392
               

               
Cow position:
               
chr11:77745010-77745299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
105-386
               

               
Cow position:
               
chr11:35669730-35669993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
107-381
               

               
Cow position:
               
chr11:58173869-58173589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
107-389
               

               
Cow position:
               
chr11:42016403-42016677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
107-398
               

               
Cow position:
               
chr11:33311221-33310920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
108-349
               

               
Cow position:
               
chr11:33971561-33971808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 170
               

               
Conread position:
               
109-320
               

               
Cow position:
               
chr11:75915219-75915018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
111-398
               

               
Cow position:
               
chr11:64867795-64868073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
112-325
               

               
Cow position:
               
chr11:8264391-8264603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
113-274
               

               
Cow position:
               
chr11:36180677-36180517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr11:62567058-62566833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
113-357
               

               
Cow position:
               
chr11:58111712-58111967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr11:8457675-8457948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr11:24437995-24438272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
114-325
               

               
Cow position:
               
chr11:7616982-7617187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
198, 13
               

               
Conread position:
               
114-326
               

               
Cow position:
               
chr11:17552850-17553062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
114-331
               

               
Cow position:
               
chr11:32800855-32800639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
114-342
               

               
Cow position:
               
chr11:61178586-61178360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
114-360
               

               
Cow position:
               
chr11:68326630-68326879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
114-395
               

               
Cow position:
               
chr11:5329015-5328729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
115-386
               

               
Cow position:
               
chr11:1380907-1380634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
116-378
               

               
Cow position:
               
chr11:66939360-66939626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
116-392
               

               
Cow position:
               
chr11:50472547-50472270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
117-245
               

               
Cow position:
               
chr11:46335077-46334949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chr11:65436449-65436257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
117-342
               

               
Cow position:
               
chr11:42206638-42206424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
117-389
               

               
Cow position:
               
chr11:372487-372749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
117-392
               

               
Cow position:
               
chr11:36182924-36182643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
117-392
               

               
Cow position:
               
chr11:63866436-63866706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
161, 38
               

               
Conread position:
               
117-395
               

               
Cow position:
               
chr11:40395662-40395387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
117-396
               

               
Cow position:
               
chr11:3740194-3739902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
117-397
               

               
Cow position:
               
chr11:6202684-6202391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 285
               

               
Conread position:
               
117-398
               

               
Cow position:
               
chr11:6245550-6245265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
118-386
               

               
Cow position:
               
chr11:17830977-17831262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 242
               

               
Conread position:
               
118-389
               

               
Cow position:
               
chr11:63998865-63999132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
118-395
               

               
Cow position:
               
chr11:25791462-25791744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 243
               

               
Conread position:
               
119-327
               

               
Cow position:
               
chr11:44614944-44615150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
119-338
               

               
Cow position:
               
chr11:49487014-49486785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
119-358
               

               
Cow position:
               
chr11:77758536-77758774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
119-386
               

               
Cow position:
               
chr11:8496256-8495991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
120-345
               

               
Cow position:
               
chr11:42498067-42497844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
120-354
               

               
Cow position:
               
chr11:1485010-1485236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
120-359
               

               
Cow position:
               
chr11:37982349-37982592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
120-389
               

               
Cow position:
               
chr11:13940410-13940146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
120-397
               

               
Cow position:
               
chr11:37435762-37436038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
120-398
               

               
Cow position:
               
chr11:21508233-21507950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
120-398
               

               
Cow position:
               
chr11:27913511-27913232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
121-369
               

               
Cow position:
               
chr11:72292786-72292528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
121-386
               

               
Cow position:
               
chr11:2084367-2084102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
121-394
               

               
Cow position:
               
chr11:6423177-6423454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
229, 12
               

               
Conread position:
               
122-369
               

               
Cow position:
               
chr11:47785000-47784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
123-278
               

               
Cow position:
               
chr11:43736883-43737041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr11:64607027-64607230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
123-383
               

               
Cow position:
               
chr11:62778660-62778406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
123-386
               

               
Cow position:
               
chr11:78820363-78820113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
123-398
               

               
Cow position:
               
chr11:29954589-29954318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
124-315
               

               
Cow position:
               
chr11:55911428-55911617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
124-389
               

               
Cow position:
               
chr11:37989408-37989664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
125-393
               

               
Cow position:
               
chr11:30708725-30708458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
126-382
               

               
Cow position:
               
chr11:53717570-53717844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
126-392
               

               
Cow position:
               
chr11:6643030-6642765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
126-392
               

               
Cow position:
               
chr11:17721579-17721849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
127-264
               

               
Cow position:
               
chr11:41295009-41295143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr11:6429532-6429721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
127-315
               

               
Cow position:
               
chr11:28191194-28191373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
127-318
               

               
Cow position:
               
chr11:11483535-11483338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
127-326
               

               
Cow position:
               
chr11:47103005-47102819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
127-342
               

               
Cow position:
               
chr11:25721786-25721993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 66
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr11:67911944-67912197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
127-392
               

               
Cow position:
               
chr11:69119516-69119246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
128-314
               

               
Cow position:
               
chr11:65431729-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
128-325
               

               
Cow position:
               
chr11:47904360-47904139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
128-357
               

               
Cow position:
               
chr11:31901399-31901173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
128-362
               

               
Cow position:
               
chr11:74152530-74152773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
128-365
               

               
Cow position:
               
chr11:46884592-46884353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
128-369
               

               
Cow position:
               
chr11:32782654-32782908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
128-389
               

               
Cow position:
               
chr11:66572278-66572541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
128-392
               

               
Cow position:
               
chr11:36112625-36112376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
128-398
               

               
Cow position:
               
chr11:80923111-80923374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
129-249
               

               
Cow position:
               
chr11:34623430-34623309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
129-278
               

               
Cow position:
               
chr11:9294012-9293861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
129-333
               

               
Cow position:
               
chr11:7651853-7652055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
129-340
               

               
Cow position:
               
chr11:38226457-38226247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
129-346
               

               
Cow position:
               
chr11:6319916-6320134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
129-359
               

               
Cow position:
               
chr11:77017446-77017227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
129-360
               

               
Cow position:
               
chr11:47314210-47314447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
129-360
               

               
Cow position:
               
chr11:87171863-87172092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
129-361
               

               
Cow position:
               
chr11:18119718-18119485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
129-365
               

               
Cow position:
               
chr11:17517617-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
129-373
               

               
Cow position:
               
chr11:40516898-40517144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 194
               

               
Conread position:
               
129-383
               

               
Cow position:
               
chr11:17990021-17990275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
129-389
               

               
Cow position:
               
chr11:13863882-13864149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
129-389
               

               
Cow position:
               
chr11:71854065-71854323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
129-394
               

               
Cow position:
               
chr11:36218506-36218243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
129-397
               

               
Cow position:
               
chr11:2907322-2907575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
129-397
               

               
Cow position:
               
chr11:84385425-84385691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
129-398
               

               
Cow position:
               
chr11:5075014-5075281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
129-398
               

               
Cow position:
               
chr11:27248705-27248439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
130-252
               

               
Cow position:
               
chr11:25315984-25315866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
130-253
               

               
Cow position:
               
chr11:59744214-59744087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
130-375
               

               
Cow position:
               
chr11:18425025-18425271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
130-376
               

               
Cow position:
               
chr11:18508815-18509062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
130-384
               

               
Cow position:
               
chr11:15504323-15504074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
130-386
               

               
Cow position:
               
chr11:17676160-17676414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
130-392
               

               
Cow position:
               
chr11:30370320-30370062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
130-392
               

               
Cow position:
               
chr11:61454284-61454561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
130-396
               

               
Cow position:
               
chr11:59862424-59862155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
131-279
               

               
Cow position:
               
chr11:71481812-71481960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
131-319
               

               
Cow position:
               
chr11:5559496-5559307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
131-339
               

               
Cow position:
               
chr11:3208148-3207935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
131-392
               

               
Cow position:
               
chr11:26143885-26144143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
131-398
               

               
Cow position:
               
chr11:39462833-39462570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
132-334
               

               
Cow position:
               
chr11:69696738-69696927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
132-344
               

               
Cow position:
               
chr11:80296647-80296852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
132-385
               

               
Cow position:
               
chr11:45646386-45646633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 8
               

               
Conread position:
               
132-386
               

               
Cow position:
               
chr11:16315084-16314831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
132-386
               

               
Cow position:
               
chr11:34616471-34616217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
132-386
               

               
Cow position:
               
chr11:80616438-80616202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
133-342
               

               
Cow position:
               
chr11:41278401-41278188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
133-345
               

               
Cow position:
               
chr11:23220573-23220362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
133-353
               

               
Cow position:
               
chr11:23518405-23518628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
133-378
               

               
Cow position:
               
chr11:69417613-69417370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
133-392
               

               
Cow position:
               
chr11:5961519-5961256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
133-392
               

               
Cow position:
               
chr11:32254004-32254264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 113
               

               
Conread position:
               
133-393
               

               
Cow position:
               
chr11:65826547-65826799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
133-397
               

               
Cow position:
               
chr11:65607479-65607746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr11:32817605-32817782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chr11:8421919-8422098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
134-390
               

               
Cow position:
               
chr11:48429328-48429070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
134-390
               

               
Cow position:
               
chr11:75874562-75874800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
134-397
               

               
Cow position:
               
chr11:53773892-53773629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr11:84758031-84757831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
135-386
               

               
Cow position:
               
chr11:39060397-39060643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
135-389
               

               
Cow position:
               
chr11:1932280-1932536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
135-398
               

               
Cow position:
               
chr11:7013517-7013794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
135-398
               

               
Cow position:
               
chr11:19246998-19247251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
136-315
               

               
Cow position:
               
chr11:9691216-9691034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
136-389
               

               
Cow position:
               
chr11:15772505-15772756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 110
               

               
Conread position:
               
137-375
               

               
Cow position:
               
chr11:67931284-67931515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
137-386
               

               
Cow position:
               
chr11:57503688-57503441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
26, 158
               

               
Conread position:
               
138-386
               

               
Cow position:
               
chr11:27719133-27719360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
138-397
               

               
Cow position:
               
chr11:45435283-45435025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
139-289
               

               
Cow position:
               
chr11:22102550-22102701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 134
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr11:19487275-19487525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr11:17508347-17508615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
140-286
               

               
Cow position:
               
chr11:30528807-30528657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
140-345
               

               
Cow position:
               
chr11:81065846-81066050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
140-355
               

               
Cow position:
               
chr11:75557721-75557949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr11:2900511-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
110, 6
               

               
Conread position:
               
140-384
               

               
Cow position:
               
chr11:45283131-45282889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
140-389
               

               
Cow position:
               
chr11:40459310-40459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
140-392
               

               
Cow position:
               
chr11:20194218-20194473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
141-313
               

               
Cow position:
               
chr11:17465876-17466057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 179
               

               
Conread position:
               
141-325
               

               
Cow position:
               
chr11:60493542-60493718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
141-347
               

               
Cow position:
               
chr11:66041475-66041276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
141-349
               

               
Cow position:
               
chr11:1160015-1159808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
104, 154
               

               
Conread position:
               
141-355
               

               
Cow position:
               
chr11:41980000-41980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
141-358
               

               
Cow position:
               
chr11:20117277-20117060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
141-389
               

               
Cow position:
               
chr11:44032206-44031961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
210, 13
               

               
Conread position:
               
141-393
               

               
Cow position:
               
chr11:3720460-3720207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
11, 192
               

               
Conread position:
               
141-393
               

               
Cow position:
               
chr11:48776110-48776362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
115, 238
               

               
Conread position:
               
141-397
               

               
Cow position:
               
chr11:31228159-31227908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
142-315
               

               
Cow position:
               
chr11:33271631-33271460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
142-354
               

               
Cow position:
               
chr11:77227732-77227530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 85
               

               
Conread position:
               
142-391
               

               
Cow position:
               
chr11:41213256-41212996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
143-271
               

               
Cow position:
               
chr11:30111812-30111678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
143-332
               

               
Cow position:
               
chr11:26057446-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
143-345
               

               
Cow position:
               
chr11:80370315-80370114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
106, 159
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr11:12528084-12528287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
143-360
               

               
Cow position:
               
chr11:15366777-15366988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
143-360
               

               
Cow position:
               
chr11:63478563-63478362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr11:75246366-75246143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 189
               

               
Conread position:
               
143-362
               

               
Cow position:
               
chr11:12555102-12555323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
143-367
               

               
Cow position:
               
chr11:45350308-45350534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
143-375
               

               
Cow position:
               
chr11:8437490-8437724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
143-375
               

               
Cow position:
               
chr11:34968411-34968644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 160
               

               
Conread position:
               
143-385
               

               
Cow position:
               
chr11:36521080-36520834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
162, 5
               

               
Conread position:
               
143-386
               

               
Cow position:
               
chr11:866482-866251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
143-386
               

               
Cow position:
               
chr11:25119737-25119972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
143-392
               

               
Cow position:
               
chr11:62579004-62578755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
143-393
               

               
Cow position:
               
chr11:65058410-65058667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
143-397
               

               
Cow position:
               
chr11:64009927-64009664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chr11:14470566-14470317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chr11:46746834-46746579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
143-398
               

               
Cow position:
               
chr11:48672915-48672660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
105, 209
               

               
Conread position:
               
144-345
               

               
Cow position:
               
chr11:58186073-58185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
144-356
               

               
Cow position:
               
chr11:6094204-6094414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
144-392
               

               
Cow position:
               
chr11:80412809-80413062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 196
               

               
Conread position:
               
144-394
               

               
Cow position:
               
chr11:74380393-74380139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 203
               

               
Conread position:
               
144-397
               

               
Cow position:
               
chr11:39250163-39249919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 11
               

               
Conread position:
               
145-389
               

               
Cow position:
               
chr11:1067238-1067484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
146-367
               

               
Cow position:
               
chr11:73983791-73984026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
146-393
               

               
Cow position:
               
chr11:42291643-42291884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
148-323
               

               
Cow position:
               
chr11:43641583-43641408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
148-386
               

               
Cow position:
               
chr11:66325910-66326151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 236
               

               
Conread position:
               
148-393
               

               
Cow position:
               
chr11:29659754-29659511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chr11:21886025-21885783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
149-357
               

               
Cow position:
               
chr11:35434462-35434676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 190
               

               
Conread position:
               
149-375
               

               
Cow position:
               
chr11:31024605-31024837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
149-385
               

               
Cow position:
               
chr11:30808403-30808634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
149-397
               

               
Cow position:
               
chr11:30764688-30764433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
150-309
               

               
Cow position:
               
chr11:86925769-86925925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
150-337
               

               
Cow position:
               
chr11:40818438-40818619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr11:33293584-33293818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
150-386
               

               
Cow position:
               
chr11:83033036-83033277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
150-394
               

               
Cow position:
               
chr11:20684375-20684623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
151-255
               

               
Cow position:
               
chr11:68909341-68909446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
151-294
               

               
Cow position:
               
chr11:65939669-65939812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
151-299
               

               
Cow position:
               
chr11:70634888-70634732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-324
               

               
Cow position:
               
chr11:33369344-33369171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
97, 5
               

               
Conread position:
               
151-325
               

               
Cow position:
               
chr11:76896179-76896355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-331
               

               
Cow position:
               
chr11:35732889-35733070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr11:35924256-35924066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
151-341
               

               
Cow position:
               
chr11:34778251-34778440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr11:81143350-81143540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
151-345
               

               
Cow position:
               
chr11:3728680-3728485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 178
               

               
Conread position:
               
151-345
               

               
Cow position:
               
chr11:36092726-36092917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
164, 65
               

               
Conread position:
               
151-349
               

               
Cow position:
               
chr11:7571814-7571620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
151-349
               

               
Cow position:
               
chr11:57767382-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
151-354
               

               
Cow position:
               
chr11:64781282-64781077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr11:42786489-42786695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 178
               

               
Conread position:
               
151-356
               

               
Cow position:
               
chr11:47412037-47411830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
17, 194
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr11:25968660-25968867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr11:74427871-74427661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
151-362
               

               
Cow position:
               
chr11:41238997-41239207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
151-363
               

               
Cow position:
               
chr11:66099664-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
151-366
               

               
Cow position:
               
chr11:51846491-51846276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
151-373
               

               
Cow position:
               
chr11:43914486-43914263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr11:33002161-33001934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr11:70304270-70304040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 207
               

               
Conread position:
               
151-385
               

               
Cow position:
               
chr11:70756667-70756442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:19946614-19946394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:27343466-27343229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:28078682-28078462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:35562914-35562678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:35665365-35665604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:36978001-36977765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 178
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:59024159-59024401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
151-386
               

               
Cow position:
               
chr11:81300427-81300662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr11:32710708-32710472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr11:36058992-36058754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-389
               

               
Cow position:
               
chr11:13500203-13499973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-389
               

               
Cow position:
               
chr11:68909660-68909890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
151-391
               

               
Cow position:
               
chr11:55053055-55052824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
228, 5
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:3597313-3597070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:4207505-4207264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:6857924-6857683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:19657021-19657269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:40792500-40792754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
151-392
               

               
Cow position:
               
chr11:80893976-80893735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 188
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chr11:3715015-3714778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chr11:36914371-36914615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-393
               

               
Cow position:
               
chr11:45619543-45619304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-395
               

               
Cow position:
               
chr11:45276955-45277198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 172
               

               
Conread position:
               
151-397
               

               
Cow position:
               
chr11:8670210-8669955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
151-397
               

               
Cow position:
               
chr11:37804358-37804606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
151-398
               

               
Cow position:
               
chr11:35805854-35805604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
151-398
               

               
Cow position:
               
chr11:52690332-52690573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
152-275
               

               
Cow position:
               
chr11:28850441-28850318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
152-293
               

               
Cow position:
               
chr11:80503968-80504111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
152-297
               

               
Cow position:
               
chr11:31525464-31525603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
152-310
               

               
Cow position:
               
chr11:35848949-35849103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
152-311
               

               
Cow position:
               
chr11:38879479-38879308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
152-311
               

               
Cow position:
               
chr11:70821236-70821078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
152-324
               

               
Cow position:
               
chr11:73638045-73637875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
152-331
               

               
Cow position:
               
chr11:86664589-86664768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
96, 143
               

               
Conread position:
               
152-357
               

               
Cow position:
               
chr11:60296930-60296718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
152-358
               

               
Cow position:
               
chr11:49396333-49396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
152-364
               

               
Cow position:
               
chr11:85186336-85186547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr11:77705943-77705719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
152-385
               

               
Cow position:
               
chr11:27747110-27746883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
152-386
               

               
Cow position:
               
chr11:82730792-82731039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
152-392
               

               
Cow position:
               
chr11:38236437-38236204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
152-394
               

               
Cow position:
               
chr11:20238868-20238628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr11:258979-259225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr11:3283232-3282979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr11:10956682-10956927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
237, 75
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr11:17889535-17889781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 241
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr11:64048582-64048350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
236, 45
               

               
Conread position:
               
153-236
               

               
Cow position:
               
chr11:70745307-70745390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
84
               

               
Alignm identity:
               
74
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-271
               

               
Cow position:
               
chr11:68870474-68870587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-273
               

               
Cow position:
               
chr11:28092643-28092521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-281
               

               
Cow position:
               
chr11:70273653-70273524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
153-300
               

               
Cow position:
               
chr11:32586935-32587079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
153-301
               

               
Cow position:
               
chr11:63977246-63977101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
153-302
               

               
Cow position:
               
chr11:21637409-21637561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
153-306
               

               
Cow position:
               
chr11:38656991-38657145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
153-306
               

               
Cow position:
               
chr11:63038543-63038401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
153-308
               

               
Cow position:
               
chr11:7928868-7928710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
153-311
               

               
Cow position:
               
chr11:75388187-75388341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 12
               

               
Conread position:
               
153-312
               

               
Cow position:
               
chr11:27413620-27413783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
153-315
               

               
Cow position:
               
chr11:18574662-18574826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-316
               

               
Cow position:
               
chr11:4653069-4653226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
153-323
               

               
Cow position:
               
chr11:15591289-15591453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-331
               

               
Cow position:
               
chr11:59471296-59471115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-332
               

               
Cow position:
               
chr11:37042165-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
153-332
               

               
Cow position:
               
chr11:74839794-74839623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
153-334
               

               
Cow position:
               
chr11:68570190-68570370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
153-337
               

               
Cow position:
               
chr11:1625031-1625216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
153-338
               

               
Cow position:
               
chr11:19147950-19148130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
153-339
               

               
Cow position:
               
chr11:44176783-44176604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-340
               

               
Cow position:
               
chr11:70600636-70600824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
153-341
               

               
Cow position:
               
chr11:45671189-45671366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
153-342
               

               
Cow position:
               
chr11:2484605-2484792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
153-345
               

               
Cow position:
               
chr11:10066540-10066348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
153-348
               

               
Cow position:
               
chr11:71456023-71455821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 185
               

               
Conread position:
               
153-349
               

               
Cow position:
               
chr11:35544277-35544084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
92, 172
               

               
Conread position:
               
153-349
               

               
Cow position:
               
chr11:49210625-49210826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
10, 115
               

               
Conread position:
               
153-349
               

               
Cow position:
               
chr11:66685719-66685910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
153-351
               

               
Cow position:
               
chr11:31994269-31994071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
153-358
               

               
Cow position:
               
chr11:35182796-35183002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
153-359
               

               
Cow position:
               
chr11:77241893-77241692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
153-361
               

               
Cow position:
               
chr11:41576682-41576884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
153-361
               

               
Cow position:
               
chr11:43627126-43627333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 92
               

               
Conread position:
               
153-363
               

               
Cow position:
               
chr11:46784653-46784456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
153-365
               

               
Cow position:
               
chr11:10563196-10562988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 78
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chr11:14649121-14649343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chr11:17638327-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 136
               

               
Conread position:
               
153-375
               

               
Cow position:
               
chr11:52297032-52297250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
106, 81
               

               
Conread position:
               
153-375
               

               
Cow position:
               
chr11:67614734-67614952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
153-379
               

               
Cow position:
               
chr11:34646786-34646555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
153-380
               

               
Cow position:
               
chr11:35212980-35213203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
153-383
               

               
Cow position:
               
chr11:1980074-1980307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
153-383
               

               
Cow position:
               
chr11:30165702-30165472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
91, 208
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr11:52380681-52380912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr11:62239932-62239705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:689467-689701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 150
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:30192368-30192134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:35536767-35536546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:45700682-45700449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 171
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:46922696-46922927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chr11:48650178-48649931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
153-389
               

               
Cow position:
               
chr11:17321858-17321603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
153-391
               

               
Cow position:
               
chr11:17278487-17278718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
153-391
               

               
Cow position:
               
chr11:72443305-72443066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr11:17227459-17227690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr11:25620199-25620443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 92
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr11:47351526-47351295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 137
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr11:49057574-49057356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr11:62482834-62482592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
153-393
               

               
Cow position:
               
chr11:897855-897625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
153-393
               

               
Cow position:
               
chr11:14378633-14378391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 21
               

               
Conread position:
               
153-393
               

               
Cow position:
               
chr11:42083644-42083423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
231, 72
               

               
Conread position:
               
153-393
               

               
Cow position:
               
chr11:50073146-50072889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
153-394
               

               
Cow position:
               
chr11:53510304-53510549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
43, 180
               

               
Conread position:
               
153-395
               

               
Cow position:
               
chr11:38334712-38334473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
153-395
               

               
Cow position:
               
chr11:70951059-70950821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
153-396
               

               
Cow position:
               
chr11:32054993-32055240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:5602647-5602397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:33348008-33348238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:41281239-41280984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:47837510-47837268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:55334110-55333856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
153-397
               

               
Cow position:
               
chr11:71492673-71492911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr11:49153131-49152895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 76
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr11:49255603-49255353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 237
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr11:52132630-52132873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr11:55636033-55636279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 146
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr11:55744660-55744414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
154-290
               

               
Cow position:
               
chr11:57873999-57873863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
154-357
               

               
Cow position:
               
chr11:48233030-48232815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
154-373
               

               
Cow position:
               
chr11:4221507-4221290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 126
               

               
Conread position:
               
154-385
               

               
Cow position:
               
chr11:7874331-7874098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chr11:6006499-6006263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
196, 89
               

               
Conread position:
               
154-389
               

               
Cow position:
               
chr11:32126806-32126561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 106
               

               
Conread position:
               
154-391
               

               
Cow position:
               
chr11:21843949-21844178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
154-397
               

               
Cow position:
               
chr11:44223071-44222837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
155-266
               

               
Cow position:
               
chr11:81244073-81244185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
155-301
               

               
Cow position:
               
chr11:69035349-69035202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
155-311
               

               
Cow position:
               
chr11:49192266-49192424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
155-316
               

               
Cow position:
               
chr11:44016434-44016272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chr11:36847358-36847190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
155-323
               

               
Cow position:
               
chr11:62606607-62606438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr11:71303768-71303599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-326
               

               
Cow position:
               
chr11:50629459-50629295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
155-330
               

               
Cow position:
               
chr11:81175787-81175611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
155-333
               

               
Cow position:
               
chr11:30485846-30485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
155-336
               

               
Cow position:
               
chr11:71814890-71814715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr11:21590577-21590392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
155-340
               

               
Cow position:
               
chr11:26442314-26442500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr11:80007874-80008068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
155-351
               

               
Cow position:
               
chr11:23278775-23278970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
155-359
               

               
Cow position:
               
chr11:25614614-25614828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 193
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr11:10876468-10876263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
155-360
               

               
Cow position:
               
chr11:48315211-48315412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
155-368
               

               
Cow position:
               
chr11:63165462-63165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
155-375
               

               
Cow position:
               
chr11:9237659-9237877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
155-376
               

               
Cow position:
               
chr11:71022190-71021969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
155-378
               

               
Cow position:
               
chr11:3896510-3896732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
155-379
               

               
Cow position:
               
chr11:4225275-4225063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
155-380
               

               
Cow position:
               
chr11:31413646-31413418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
155-386
               

               
Cow position:
               
chr11:61675653-61675427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
155-389
               

               
Cow position:
               
chr11:77013959-77013740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
155-390
               

               
Cow position:
               
chr11:42067053-42066816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
171, 95
               

               
Conread position:
               
155-391
               

               
Cow position:
               
chr11:47310795-47311030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
89, 196
               

               
Conread position:
               
155-392
               

               
Cow position:
               
chr11:5433455-5433221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
189, 76
               

               
Conread position:
               
155-392
               

               
Cow position:
               
chr11:30964531-30964299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
155-392
               

               
Cow position:
               
chr11:48086106-48085871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
155-393
               

               
Cow position:
               
chr11:18924936-18924697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
155-393
               

               
Cow position:
               
chr11:35580450-35580211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
215, 0
               

               
Conread position:
               
155-394
               

               
Cow position:
               
chr11:48306157-48306396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
155-395
               

               
Cow position:
               
chr11:35347562-35347804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
93, 118
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr11:19591807-19592045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr11:64077313-64077559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
195, 114
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr11:68883909-68883664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr11:71934758-71935009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr11:76369341-76369576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
155-398
               

               
Cow position:
               
chr11:5418071-5418314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
195, 71
               

               
Conread position:
               
155-398
               

               
Cow position:
               
chr11:75285567-75285819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
156-280
               

               
Cow position:
               
chr11:85262705-85262581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
156-289
               

               
Cow position:
               
chr11:14447699-14447565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
156-303
               

               
Cow position:
               
chr11:23278965-23279116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
156-305
               

               
Cow position:
               
chr11:68592207-68592057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
156-310
               

               
Cow position:
               
chr11:63491207-63491052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
156-315
               

               
Cow position:
               
chr11:17369714-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
156-315
               

               
Cow position:
               
chr11:18484013-18484159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
156-315
               

               
Cow position:
               
chr11:84748048-84748211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
156-320
               

               
Cow position:
               
chr11:62102257-62102423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:46010071-46010232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
156-325
               

               
Cow position:
               
chr11:44859095-44859267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
156-325
               

               
Cow position:
               
chr11:63475485-63475653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 10
               

               
Conread position:
               
156-326
               

               
Cow position:
               
chr11:69421517-69421694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
156-335
               

               
Cow position:
               
chr11:13404861-13405023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr11:63849761-63849946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-342
               

               
Cow position:
               
chr11:44620142-44619957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
156-348
               

               
Cow position:
               
chr11:4363728-4363915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr11:6581022-6580828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr11:62456071-62456264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr11:79869532-79869321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
156-355
               

               
Cow position:
               
chr11:19549665-19549474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
156-357
               

               
Cow position:
               
chr11:15017246-15017044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
156-375
               

               
Cow position:
               
chr11:4732533-4732312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-375
               

               
Cow position:
               
chr11:7458091-7458312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-375
               

               
Cow position:
               
chr11:40608405-40608624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
156-376
               

               
Cow position:
               
chr11:63382010-63382222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
156-376
               

               
Cow position:
               
chr11:65495156-65495367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
156-378
               

               
Cow position:
               
chr11:5792596-5792372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
156-384
               

               
Cow position:
               
chr11:83043179-83043402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chr11:36940405-36940637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chr11:48296212-48295992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chr11:57724634-57724866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chr11:83042052-83042297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chr11:83357585-83357354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 173
               

               
Conread position:
               
156-389
               

               
Cow position:
               
chr11:62811485-62811253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
156-391
               

               
Cow position:
               
chr11:35724158-35723924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
91, 196
               

               
Conread position:
               
156-391
               

               
Cow position:
               
chr11:67600966-67600738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:4636986-4637219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:37918860-37919093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:41437997-41438234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:42884597-42884833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
92, 108
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:46329686-46329447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:49872699-49872932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr11:69168777-69168537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
156-394
               

               
Cow position:
               
chr11:35444234-35443996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 226
               

               
Conread position:
               
156-395
               

               
Cow position:
               
chr11:72871085-72870848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
156-397
               

               
Cow position:
               
chr11:40794158-40794406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
156-397
               

               
Cow position:
               
chr11:62620564-62620324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
156-397
               

               
Cow position:
               
chr11:85571617-85571857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
157-280
               

               
Cow position:
               
chr11:30711907-30712030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 110
               

               
Conread position:
               
157-299
               

               
Cow position:
               
chr11:53460885-53460742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
157-312
               

               
Cow position:
               
chr11:12742307-12742458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
157-314
               

               
Cow position:
               
chr11:2937485-2937633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
157-323
               

               
Cow position:
               
chr11:82732963-82733128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
157-338
               

               
Cow position:
               
chr11:42335984-42335789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
157-346
               

               
Cow position:
               
chr11:68829809-68829618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
157-355
               

               
Cow position:
               
chr11:47110443-47110242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 177
               

               
Conread position:
               
157-359
               

               
Cow position:
               
chr11:42191991-42192202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
157-360
               

               
Cow position:
               
chr11:37099985-37100184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
157-361
               

               
Cow position:
               
chr11:73940373-73940578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 193
               

               
Conread position:
               
157-369
               

               
Cow position:
               
chr11:79466409-79466187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
157-370
               

               
Cow position:
               
chr11:84764209-84764011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
157-376
               

               
Cow position:
               
chr11:29308770-29308549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
157-384
               

               
Cow position:
               
chr11:43360600-43360816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
157-384
               

               
Cow position:
               
chr11:53778807-53778577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chr11:5417074-5416843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chr11:20762039-20761806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 161
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chr11:62663059-62663273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chr11:64101960-64101734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
157-389
               

               
Cow position:
               
chr11:70483664-70483895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
157-392
               

               
Cow position:
               
chr11:49149233-49148992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 79
               

               
Conread position:
               
157-392
               

               
Cow position:
               
chr11:50152626-50152861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 99
               

               
Conread position:
               
157-393
               

               
Cow position:
               
chr11:77238318-77238082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
157-396
               

               
Cow position:
               
chr11:2788583-2788340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
157-396
               

               
Cow position:
               
chr11:68904901-68905128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
157-397
               

               
Cow position:
               
chr11:85723881-85723646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 125
               

               
Conread position:
               
158-325
               

               
Cow position:
               
chr11:54872574-54872740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr11:4151129-4150953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
158-342
               

               
Cow position:
               
chr11:40538735-40538553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 73
               

               
Conread position:
               
158-349
               

               
Cow position:
               
chr11:63498945-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
158-375
               

               
Cow position:
               
chr11:3908427-3908645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 154
               

               
Conread position:
               
158-380
               

               
Cow position:
               
chr11:15382309-15382538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-392
               

               
Cow position:
               
chr11:7560187-7559952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 87
               

               
Conread position:
               
158-394
               

               
Cow position:
               
chr11:18699057-18698826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
159-291
               

               
Cow position:
               
chr11:60488467-60488332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
159-307
               

               
Cow position:
               
chr11:2830841-2830694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
159-317
               

               
Cow position:
               
chr11:15881235-15881393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
159-323
               

               
Cow position:
               
chr11:46314198-46314032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
159-324
               

               
Cow position:
               
chr11:67208434-67208273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
159-344
               

               
Cow position:
               
chr11:4382071-4382242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr11:22884590-22884413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
159-346
               

               
Cow position:
               
chr11:30322309-30322494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
159-348
               

               
Cow position:
               
chr11:79666077-79666265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
159-357
               

               
Cow position:
               
chr11:12080028-12079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr11:21124424-21124621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 169
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr11:36361456-36361659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
159-359
               

               
Cow position:
               
chr11:86895557-86895362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr11:21830026-21830226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr11:42084488-42084692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
159-364
               

               
Cow position:
               
chr11:26535969-26535768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
159-365
               

               
Cow position:
               
chr11:56115122-56114918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
159-381
               

               
Cow position:
               
chr11:46245674-46245902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
159-383
               

               
Cow position:
               
chr11:36136293-36136061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 136
               

               
Conread position:
               
159-385
               

               
Cow position:
               
chr11:43430250-43430494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 190
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:1485675-1485916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 83
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:29677392-29677161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:41985863-41986087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:43524795-43524567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:56288730-56288504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
185, 161
               

               
Conread position:
               
159-386
               

               
Cow position:
               
chr11:77546581-77546374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr11:30172484-30172265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr11:64029082-64029307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr11:62964679-62964444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 137
               

               
Conread position:
               
159-392
               

               
Cow position:
               
chr11:62230373-62230133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
159-392
               

               
Cow position:
               
chr11:81134984-81135214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
159-392
               

               
Cow position:
               
chr11:81763054-81762815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
159-393
               

               
Cow position:
               
chr11:13592924-13592687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
159-394
               

               
Cow position:
               
chr11:15369574-15369337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 87
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chr11:6594044-6594302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chr11:10095528-10095293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
159-396
               

               
Cow position:
               
chr11:63065837-63065603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
159-397
               

               
Cow position:
               
chr11:5231462-5231707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
173, 87
               

               
Conread position:
               
159-397
               

               
Cow position:
               
chr11:68913328-68913086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
159-397
               

               
Cow position:
               
chr11:76890226-76889992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
159-398
               

               
Cow position:
               
chr11:3715424-3715185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
160-298
               

               
Cow position:
               
chr11:53512311-53512169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
160-316
               

               
Cow position:
               
chr11:51683400-51683244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
160-323
               

               
Cow position:
               
chr11:37565053-37564895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chr11:71192156-71191989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr11:32108504-32108675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
160-334
               

               
Cow position:
               
chr11:4411689-4411858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
160-335
               

               
Cow position:
               
chr11:38223609-38223778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
160-347
               

               
Cow position:
               
chr11:36300400-36300580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
160-348
               

               
Cow position:
               
chr11:1932154-1931958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
160-357
               

               
Cow position:
               
chr11:25604137-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr11:81041778-81041986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
160-368
               

               
Cow position:
               
chr11:19891020-19890819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
160-373
               

               
Cow position:
               
chr11:3920119-3920332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 151
               

               
Conread position:
               
160-375
               

               
Cow position:
               
chr11:35769071-35768855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
160-376
               

               
Cow position:
               
chr11:31537264-31537471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
160-378
               

               
Cow position:
               
chr11:70458228-70458007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
160-379
               

               
Cow position:
               
chr11:32260715-32260500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
160-384
               

               
Cow position:
               
chr11:46427223-46427447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
160-385
               

               
Cow position:
               
chr11:6194572-6194366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:9270554-9270766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:27907954-27907741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:31417607-31417379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:40466939-40467167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:53888465-53888677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 145
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:66188137-66188358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
160-386
               

               
Cow position:
               
chr11:84890543-84890758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
160-389
               

               
Cow position:
               
chr11:5218979-5219203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
160-389
               

               
Cow position:
               
chr11:16906847-16907093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
160-389
               

               
Cow position:
               
chr11:83032861-83032636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
160-392
               

               
Cow position:
               
chr11:6233694-6233927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
160-392
               

               
Cow position:
               
chr11:65157221-65157456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
160-392
               

               
Cow position:
               
chr11:83398091-83397858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
160-394
               

               
Cow position:
               
chr11:17859969-17860205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
160-396
               

               
Cow position:
               
chr11:71345131-71345375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
160-397
               

               
Cow position:
               
chr11:21549667-21549426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
160-397
               

               
Cow position:
               
chr11:63433881-63434112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:13040004-13040225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:30721284-30721045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:32398825-32398585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 131
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:34963252-34963013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:48932405-48932641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 132
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:62742464-62742694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:69978149-69977918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
160-398
               

               
Cow position:
               
chr11:76653205-76652964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
161-302
               

               
Cow position:
               
chr11:6784388-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
161-310
               

               
Cow position:
               
chr11:24551574-24551425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
161-314
               

               
Cow position:
               
chr11:1842140-1841994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-323
               

               
Cow position:
               
chr11:63484123-63483964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
161-323
               

               
Cow position:
               
chr11:83028175-83028015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
161-324
               

               
Cow position:
               
chr11:30857218-30857058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
161-324
               

               
Cow position:
               
chr11:63695655-63695825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr11:39000-38831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr11:17309585-17309422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 122
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr11:30986819-30986658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
161-325
               

               
Cow position:
               
chr11:53651823-53651660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
161-330
               

               
Cow position:
               
chr11:80695058-80695227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 161
               

               
Conread position:
               
161-352
               

               
Cow position:
               
chr11:36917582-36917784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 132
               

               
Conread position:
               
161-366
               

               
Cow position:
               
chr11:80586448-80586252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
201, 11
               

               
Conread position:
               
161-368
               

               
Cow position:
               
chr11:5201463-5201675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
161-369
               

               
Cow position:
               
chr11:30894820-30895028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-369
               

               
Cow position:
               
chr11:41215916-41215708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
87, 46
               

               
Conread position:
               
161-372
               

               
Cow position:
               
chr11:20205675-20205879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
161-373
               

               
Cow position:
               
chr11:30842842-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
161-373
               

               
Cow position:
               
chr11:55398968-55399176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 88
               

               
Conread position:
               
161-375
               

               
Cow position:
               
chr11:28675260-28675046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
87, 141
               

               
Conread position:
               
161-375
               

               
Cow position:
               
chr11:32777856-32777649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
161-378
               

               
Cow position:
               
chr11:6395936-6395722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
67, 37
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr11:67615069-67615279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
161-385
               

               
Cow position:
               
chr11:62812769-62812990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr11:41353-41137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr11:30830440-30830655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
161-388
               

               
Cow position:
               
chr11:73573830-73573602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr11:18447318-18447536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr11:35351850-35352084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
161-391
               

               
Cow position:
               
chr11:75479840-75480066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr11:2917410-2917633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr11:23407643-23407417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr11:53817038-53816810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
87, 183
               

               
Conread position:
               
161-392
               

               
Cow position:
               
chr11:80639369-80639597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
181, 43
               

               
Conread position:
               
161-393
               

               
Cow position:
               
chr11:31875277-31875045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 228
               

               
Conread position:
               
161-395
               

               
Cow position:
               
chr11:5217277-5217519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-395
               

               
Cow position:
               
chr11:57608283-57608507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
226, 50
               

               
Conread position:
               
161-396
               

               
Cow position:
               
chr11:67345476-67345704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 147
               

               
Conread position:
               
161-397
               

               
Cow position:
               
chr11:62789310-62789078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
161-397
               

               
Cow position:
               
chr11:78380886-78381114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 66
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chr11:23271823-23272055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chr11:29960475-29960245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chr11:59463457-59463689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
162-320
               

               
Cow position:
               
chr11:56348649-56348806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
162-332
               

               
Cow position:
               
chr11:63407876-63407708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
162-339
               

               
Cow position:
               
chr11:4621253-4621425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
162-386
               

               
Cow position:
               
chr11:33409084-33409303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
162-387
               

               
Cow position:
               
chr11:2874584-2874349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr11:6399882-6400114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr11:24602141-24601920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
162-395
               

               
Cow position:
               
chr11:48660112-48659884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
163-289
               

               
Cow position:
               
chr11:43594247-43594373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-306
               

               
Cow position:
               
chr11:26823293-26823148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
163-321
               

               
Cow position:
               
chr11:53486979-53487130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr11:20234867-20234670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
163-375
               

               
Cow position:
               
chr11:71390393-71390591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
163-388
               

               
Cow position:
               
chr11:29786312-29786541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 226
               

               
Conread position:
               
163-389
               

               
Cow position:
               
chr11:38211822-38211601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
163-398
               

               
Cow position:
               
chr11:34644839-34644603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
71, 184
               

               
Conread position:
               
164-325
               

               
Cow position:
               
chr11:78672853-78672690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
164-345
               

               
Cow position:
               
chr11:9836275-9836457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
164-346
               

               
Cow position:
               
chr11:76248226-76248048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
164-356
               

               
Cow position:
               
chr11:42065832-42065639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 187
               

               
Conread position:
               
164-361
               

               
Cow position:
               
chr11:9699075-9699261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
164-367
               

               
Cow position:
               
chr11:68660434-68660633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
164-375
               

               
Cow position:
               
chr11:30867357-30867153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
164-376
               

               
Cow position:
               
chr11:75090039-75090250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
164-386
               

               
Cow position:
               
chr11:3405006-3405228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
164-389
               

               
Cow position:
               
chr11:62889712-62889938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
164-390
               

               
Cow position:
               
chr11:46747679-46747907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
165-302
               

               
Cow position:
               
chr11:81170208-81170065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
165-310
               

               
Cow position:
               
chr11:8828189-8828040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
165-341
               

               
Cow position:
               
chr11:66104214-66104392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
127, 66
               

               
Conread position:
               
165-349
               

               
Cow position:
               
chr11:17074049-17074223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
165-375
               

               
Cow position:
               
chr11:11533756-11533958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
165-375
               

               
Cow position:
               
chr11:42159883-42160084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
165-378
               

               
Cow position:
               
chr11:67312964-67312747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
165-386
               

               
Cow position:
               
chr11:48544615-48544392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
165-386
               

               
Cow position:
               
chr11:63485111-63484905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
165-386
               

               
Cow position:
               
chr11:72375487-72375724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
165-389
               

               
Cow position:
               
chr11:7314970-7315194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
212, 63
               

               
Conread position:
               
165-391
               

               
Cow position:
               
chr11:41313483-41313703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
165-392
               

               
Cow position:
               
chr11:30209644-30209868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
165-396
               

               
Cow position:
               
chr11:46999165-46998930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
62, 169
               

               
Conread position:
               
165-396
               

               
Cow position:
               
chr11:51729453-51729233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
221, 61
               

               
Conread position:
               
165-397
               

               
Cow position:
               
chr11:4199453-4199217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
165-397
               

               
Cow position:
               
chr11:30638773-30639003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 80
               

               
Conread position:
               
166-375
               

               
Cow position:
               
chr11:78544463-78544253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
166-389
               

               
Cow position:
               
chr11:35980963-35981192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
166-389
               

               
Cow position:
               
chr11:62754120-62754363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
166-389
               

               
Cow position:
               
chr11:87155699-87155476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
82, 172
               

               
Conread position:
               
166-396
               

               
Cow position:
               
chr11:75178076-75177844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 133
               

               
Conread position:
               
166-397
               

               
Cow position:
               
chr11:80564475-80564241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
167-289
               

               
Cow position:
               
chr11:899613-899489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
167-322
               

               
Cow position:
               
chr11:30597212-30597050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 31
               

               
Conread position:
               
167-332
               

               
Cow position:
               
chr11:72401561-72401720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
167-345
               

               
Cow position:
               
chr11:4436938-4436747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
167-386
               

               
Cow position:
               
chr11:18910706-18910918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
167-391
               

               
Cow position:
               
chr11:55762033-55761822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
167-397
               

               
Cow position:
               
chr11:56676102-56675864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 80
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr11:45872132-45872364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 206
               

               
Conread position:
               
168-398
               

               
Cow position:
               
chr11:9221546-9221779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 195
               

               
Conread position:
               
169-310
               

               
Cow position:
               
chr11:2310242-2310110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
169-390
               

               
Cow position:
               
chr11:13042973-13043191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
169-392
               

               
Cow position:
               
chr11:26274791-26275003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
169-392
               

               
Cow position:
               
chr11:58927748-58927536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
170-390
               

               
Cow position:
               
chr11:6633900-6633665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
171-289
               

               
Cow position:
               
chr11:70824537-70824658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
171-365
               

               
Cow position:
               
chr11:49207884-49207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
171-386
               

               
Cow position:
               
chr11:81405994-81406203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 89
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr11:64409138-64408945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
172-392
               

               
Cow position:
               
chr11:18852075-18851861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
172-393
               

               
Cow position:
               
chr11:27565488-27565285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
174-287
               

               
Cow position:
               
chr11:67417979-67417866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
174-340
               

               
Cow position:
               
chr11:26343272-26343106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
174-341
               

               
Cow position:
               
chr11:30600020-30600188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
174-348
               

               
Cow position:
               
chr11:64022940-64023103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
174-349
               

               
Cow position:
               
chr11:2836030-2835854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
174-349
               

               
Cow position:
               
chr11:60720284-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
174-361
               

               
Cow position:
               
chr11:5467251-5467061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
175, 69
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr11:35149572-35149380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
174-365
               

               
Cow position:
               
chr11:28993578-28993758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
174-376
               

               
Cow position:
               
chr11:21173267-21173465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chr11:18543351-18543545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
174-385
               

               
Cow position:
               
chr11:39554019-39554238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr11:6296908-6297121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr11:8524948-8525154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr11:18656392-18656176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
82, 211
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr11:34467732-34467530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
174-389
               

               
Cow position:
               
chr11:48474879-48474659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr11:47772212-47772437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr11:60301807-60302008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
175-341
               

               
Cow position:
               
chr11:30654817-30654659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
175-375
               

               
Cow position:
               
chr11:63975300-63975099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
175-385
               

               
Cow position:
               
chr11:14875599-14875816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chr11:34144750-34144955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
175-389
               

               
Cow position:
               
chr11:46113083-46113290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
175-389
               

               
Cow position:
               
chr11:63435691-63435477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
175-392
               

               
Cow position:
               
chr11:39854853-39855061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
175-393
               

               
Cow position:
               
chr11:35926740-35926953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
175-397
               

               
Cow position:
               
chr11:26632844-26633064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
175-397
               

               
Cow position:
               
chr11:44017153-44016921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
175-397
               

               
Cow position:
               
chr11:85703858-85703651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
176-386
               

               
Cow position:
               
chr11:73353899-73354101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
176-393
               

               
Cow position:
               
chr11:32436513-32436284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
176-397
               

               
Cow position:
               
chr11:47755212-47755438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
68, 172
               

               
Conread position:
               
177-310
               

               
Cow position:
               
chr11:2281156-2281290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
177-356
               

               
Cow position:
               
chr11:42189294-42189473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-359
               

               
Cow position:
               
chr11:79707870-79707699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
177-364
               

               
Cow position:
               
chr11:60486249-60486438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
177-366
               

               
Cow position:
               
chr11:84228556-84228737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
177-383
               

               
Cow position:
               
chr11:66518648-66518453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr11:29779767-29779578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 162
               

               
Conread position:
               
180-384
               

               
Cow position:
               
chr11:27449468-27449650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
180-386
               

               
Cow position:
               
chr11:35791656-35791863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
180-398
               

               
Cow position:
               
chr11:69016141-69015921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
181-334
               

               
Cow position:
               
chr11:20021994-20021830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
181-345
               

               
Cow position:
               
chr11:35922033-35922196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
181-362
               

               
Cow position:
               
chr11:18791900-18792085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
181-389
               

               
Cow position:
               
chr11:59903055-59902846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
182-365
               

               
Cow position:
               
chr11:9699051-9698882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
182-384
               

               
Cow position:
               
chr11:3703114-3702911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
183-342
               

               
Cow position:
               
chr11:42067231-42067056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
183-384
               

               
Cow position:
               
chr11:38670851-38670646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
65, 162
               

               
Conread position:
               
183-389
               

               
Cow position:
               
chr11:82289749-82289538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
68, 157
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr11:8544855-8545061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 159
               

               
Conread position:
               
183-397
               

               
Cow position:
               
chr11:8988074-8988282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr11:63849100-63849271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
186-390
               

               
Cow position:
               
chr11:39499513-39499311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
186-398
               

               
Cow position:
               
chr11:29916700-29916487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
188-325
               

               
Cow position:
               
chr11:62081816-62081948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
188-360
               

               
Cow position:
               
chr11:35140066-35139892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
188-386
               

               
Cow position:
               
chr11:34896719-34896520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
188-393
               

               
Cow position:
               
chr11:56499994-56499788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
188-398
               

               
Cow position:
               
chr11:15062606-15062391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
189-378
               

               
Cow position:
               
chr11:8683923-8684115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
189-389
               

               
Cow position:
               
chr11:17493638-17493434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
189-389
               

               
Cow position:
               
chr11:52464560-52464368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
190-393
               

               
Cow position:
               
chr11:63202093-63202298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
191-332
               

               
Cow position:
               
chr11:55117599-55117457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
191-385
               

               
Cow position:
               
chr11:35109384-35109578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
191-386
               

               
Cow position:
               
chr11:11469500-11469689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
191-386
               

               
Cow position:
               
chr11:34136394-34136202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
191-392
               

               
Cow position:
               
chr11:4392193-4392401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
192-359
               

               
Cow position:
               
chr11:17807809-17807978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
192-378
               

               
Cow position:
               
chr11:31410728-31410911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
192-392
               

               
Cow position:
               
chr11:49934591-49934778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
193-386
               

               
Cow position:
               
chr11:19232799-19232993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 189
               

               
Conread position:
               
193-392
               

               
Cow position:
               
chr11:68206695-68206891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
195-389
               

               
Cow position:
               
chr11:84498794-84498994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
195-397
               

               
Cow position:
               
chr11:22977728-22977926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
196-386
               

               
Cow position:
               
chr11:71868455-71868644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
198-316
               

               
Cow position:
               
chr11:15999803-15999686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
198-325
               

               
Cow position:
               
chr11:18210037-18210154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
198-325
               

               
Cow position:
               
chr11:27688245-27688371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
198-325
               

               
Cow position:
               
chr11:37490431-37490557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
198-328
               

               
Cow position:
               
chr11:6413553-6413682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
198-351
               

               
Cow position:
               
chr11:36266121-36266280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 49
               

               
Conread position:
               
198-359
               

               
Cow position:
               
chr11:41983012-41983181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
198-362
               

               
Cow position:
               
chr11:29482286-29482453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
198-382
               

               
Cow position:
               
chr11:32693339-32693515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
198-386
               

               
Cow position:
               
chr11:53853236-53853047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
198-396
               

               
Cow position:
               
chr11:63909509-63909717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
198-397
               

               
Cow position:
               
chr11:63917315-63917528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
198-397
               

               
Cow position:
               
chr11:67804891-67804697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chr11:36920428-36920631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
199-393
               

               
Cow position:
               
chr11:84977220-84977407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
200-389
               

               
Cow position:
               
chr11:34113406-34113221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
137, 30
               

               
Conread position:
               
204-386
               

               
Cow position:
               
chr11:59873063-59872889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
206-340
               

               
Cow position:
               
chr11:38202109-38201974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
208-397
               

               
Cow position:
               
chr11:2344388-2344198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
209-394
               

               
Cow position:
               
chr11:70086463-70086286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
211-365
               

               
Cow position:
               
chr11:15682850-15683000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
211-383
               

               
Cow position:
               
chr11:7924459-7924627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
211-391
               

               
Cow position:
               
chr11:33414371-33414190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
214-359
               

               
Cow position:
               
chr11:62808372-62808520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 103
               

               
Conread position:
               
216-383
               

               
Cow position:
               
chr11:18608109-18608276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
217-385
               

               
Cow position:
               
chr11:76835496-76835665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
218-361
               

               
Cow position:
               
chr11:3769185-3769325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
218-389
               

               
Cow position:
               
chr11:19586588-19586414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
218-395
               

               
Cow position:
               
chr11:7307761-7307582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
221-346
               

               
Cow position:
               
chr11:46499135-46499009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
221-347
               

               
Cow position:
               
chr11:65858207-65858080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
221-384
               

               
Cow position:
               
chr11:72869697-72869857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
221-396
               

               
Cow position:
               
chr11:56821118-56821299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
221-397
               

               
Cow position:
               
chr11:48512287-48512113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
223-397
               

               
Cow position:
               
chr11:41809368-41809545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
226-389
               

               
Cow position:
               
chr11:35684382-35684545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-389
               

               
Cow position:
               
chr11:77128776-77128616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
226-397
               

               
Cow position:
               
chr11:76114762-76114595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
227-334
               

               
Cow position:
               
chr11:78780740-78780848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
227-340
               

               
Cow position:
               
chr11:46452252-46452140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
227-357
               

               
Cow position:
               
chr11:34623287-34623159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
227-383
               

               
Cow position:
               
chr11:69307630-69307475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
227-384
               

               
Cow position:
               
chr11:30272821-30272970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
227-385
               

               
Cow position:
               
chr11:22747213-22747368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
227-386
               

               
Cow position:
               
chr11:61958628-61958785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
227-389
               

               
Cow position:
               
chr11:40573213-40573376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
227-389
               

               
Cow position:
               
chr11:63847963-63847802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
227-391
               

               
Cow position:
               
chr11:56290630-56290465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr11:28644206-28644040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr11:30888161-30888330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
227-398
               

               
Cow position:
               
chr11:70826067-70825894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
228-353
               

               
Cow position:
               
chr11:70609914-70609790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
228-355
               

               
Cow position:
               
chr11:32615852-32615725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
228-381
               

               
Cow position:
               
chr11:58938629-58938781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
228-391
               

               
Cow position:
               
chr11:80530474-80530321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
229-386
               

               
Cow position:
               
chr11:33753795-33753946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
229-389
               

               
Cow position:
               
chr11:34692968-34692809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
229-392
               

               
Cow position:
               
chr11:23232405-23232564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
229-396
               

               
Cow position:
               
chr11:7590303-7590139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
230-346
               

               
Cow position:
               
chr11:59916263-59916144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
230-354
               

               
Cow position:
               
chr11:55714556-55714434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
230-385
               

               
Cow position:
               
chr11:377527-377682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr11:3234191-3234034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr11:15373953-15373797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr11:4652859-4653017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
230-389
               

               
Cow position:
               
chr11:29983603-29983761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
232-386
               

               
Cow position:
               
chr11:62155752-62155597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
232-386
               

               
Cow position:
               
chr11:63482317-63482467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
233-396
               

               
Cow position:
               
chr11:40478740-40478904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
233-397
               

               
Cow position:
               
chr11:36238888-36238727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
151, 14
               

               
Conread position:
               
234-357
               

               
Cow position:
               
chr11:70639956-70639833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
234-385
               

               
Cow position:
               
chr11:39118867-39118715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
234-386
               

               
Cow position:
               
chr11:29946803-29946955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr11:30925264-30925109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
234-398
               

               
Cow position:
               
chr11:68173642-68173478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
235-390
               

               
Cow position:
               
chr11:85294350-85294193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
236-342
               

               
Cow position:
               
chr11:35860690-35860585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
236-357
               

               
Cow position:
               
chr11:30805025-30805145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
236-360
               

               
Cow position:
               
chr11:71767711-71767586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
236-386
               

               
Cow position:
               
chr11:47004455-47004307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
236-389
               

               
Cow position:
               
chr11:23137945-23138098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
236-389
               

               
Cow position:
               
chr11:36658714-36658863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
236-398
               

               
Cow position:
               
chr11:38577669-38577829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
237-361
               

               
Cow position:
               
chr11:81728540-81728665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-392
               

               
Cow position:
               
chr11:71341356-71341512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-378
               

               
Cow position:
               
chr11:69415491-69415630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
238-392
               

               
Cow position:
               
chr11:53147426-53147579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
238-393
               

               
Cow position:
               
chr11:61137067-61137223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
238-393
               

               
Cow position:
               
chr11:71807459-71807617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 117
               

               
Conread position:
               
238-394
               

               
Cow position:
               
chr11:33345551-33345396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
238-394
               

               
Cow position:
               
chr11:33697742-33697592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
239-349
               

               
Cow position:
               
chr11:22468790-22468680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
239-389
               

               
Cow position:
               
chr11:56654662-56654511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
239-390
               

               
Cow position:
               
chr11:5031670-5031820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
240-386
               

               
Cow position:
               
chr11:14466383-14466528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
241-392
               

               
Cow position:
               
chr11:36799203-36799354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
245-397
               

               
Cow position:
               
chr11:1362367-1362520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
247-398
               

               
Cow position:
               
chr11:7414778-7414926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
248-398
               

               
Cow position:
               
chr11:56734726-56734577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
249-359
               

               
Cow position:
               
chr11:65842979-65843088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
249-360
               

               
Cow position:
               
chr11:31440006-31440124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chr11:46953043-46952900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chr11:80761282-80761426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
249-393
               

               
Cow position:
               
chr11:1157740-1157596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
249-396
               

               
Cow position:
               
chr11:16320379-16320235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
249-397
               

               
Cow position:
               
chr11:30934512-30934367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
249-397
               

               
Cow position:
               
chr11:42359215-42359062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
249-398
               

               
Cow position:
               
chr11:12111363-12111506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
250-397
               

               
Cow position:
               
chr11:42043902-42044044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
250-397
               

               
Cow position:
               
chr11:76606767-76606621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
252-393
               

               
Cow position:
               
chr11:61130574-61130713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
253-397
               

               
Cow position:
               
chr11:33527144-33526997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
258-368
               

               
Cow position:
               
chr11:40860472-40860582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-385
               

               
Cow position:
               
chr11:58400334-58400212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
259-392
               

               
Cow position:
               
chr11:34106584-34106717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
259-397
               

               
Cow position:
               
chr11:63687534-63687672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
260-386
               

               
Cow position:
               
chr11:21438293-21438167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
262-389
               

               
Cow position:
               
chr11:64638443-64638569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
263-395
               

               
Cow position:
               
chr11:52983757-52983623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
264-397
               

               
Cow position:
               
chr11:75965571-75965705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
267-389
               

               
Cow position:
               
chr11:55203382-55203504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
268-385
               

               
Cow position:
               
chr11:71482456-71482339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
268-398
               

               
Cow position:
               
chr11:28884749-28884879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
276-393
               

               
Cow position:
               
chr11:41175880-41175997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
276-395
               

               
Cow position:
               
chr11:70273375-70273255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
282-389
               

               
Cow position:
               
chr11:65624731-65624837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
288-392
               

               
Cow position:
               
chr11:18340984-18341087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
290-385
               

               
Cow position:
               
chr11:17515495-17515400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
299-397
               

               
Cow position:
               
chr11:30597039-30596941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.