Cow genome map

Conread name: rhea37_k16.y1

Conread position: 65-365
Cow position: chr1:25886600-25886317 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 33

Conread position: 76-493
Cow position: chr1:31418376-31417945 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 10

Conread position: 77-467
Cow position: chr1:78361313-78361685 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 141, 22

Conread position: 80-493
Cow position: chr1:29033280-29033688 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 119

Conread position: 85-321
Cow position: chr1:29413972-29413747 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 185, 110

Conread position: 85-392
Cow position: chr1:79110328-79110623 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 150, 70

Conread position: 86-397
Cow position: chr1:21720384-21720687 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 113

Conread position: 86-496
Cow position: chr1:67287005-67287397 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 88-496
Cow position: chr1:40512874-40512470 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 57

Conread position: 97-492
Cow position: chr1:22344116-22344480 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 102-395
Cow position: chr1:67328077-67327789 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 118, 92

Conread position: 102-485
Cow position: chr1:30059111-30059478 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 61, 66

Conread position: 103-496
Cow position: chr1:15026544-15026928 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 97

Conread position: 106-331
Cow position: chr1:58179505-58179293 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 114, 31

Conread position: 108-373
Cow position: chr1:38387151-38386900 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 211, 40

Conread position: 109-494
Cow position: chr1:72943735-72944109 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 81, 86

Conread position: 109-494
Cow position: chr1:98659686-98659315 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 58, 86

Conread position: 110-473
Cow position: chr1:63502048-63502405 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 45

Conread position: 114-473
Cow position: chr1:88270012-88269660 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 41

Conread position: 114-496
Cow position: chr1:80665047-80665420 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 150, 41

Conread position: 116-448
Cow position: chr1:57662198-57662516 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 232
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 253, 78

Conread position: 124-377
Cow position: chr1:72137207-72137459 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 99, 35

Conread position: 125-496
Cow position: chr1:55321935-55321573 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 34

Conread position: 131-333
Cow position: chr1:59934364-59934566 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 101, 70

Conread position: 209-487
Cow position: chr1:89770378-89770097 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 102, 55

Conread position: 212-490
Cow position: chr1:31403208-31402926 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 53, 23

Conread position: 213-496
Cow position: chr1:12061923-12061646 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 213-496
Cow position: chr1:63605484-63605204 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 11

Conread position: 220-496
Cow position: chr1:21999660-21999382 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 244

Conread position: 220-496
Cow position: chr1:76545242-76544967 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 225-372
Cow position: chr1:69537205-69537350 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 225-372
Cow position: chr1:97124116-97124260 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 226-363
Cow position: chr1:57568254-57568396 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 226-493
Cow position: chr1:73070754-73070483 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 249

Conread position: 226-494
Cow position: chr1:33551226-33551497 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 226-495
Cow position: chr1:94659984-94660246 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 127

Conread position: 226-496
Cow position: chr1:3385718-3385447 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr1:30534722-30534449 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 226-496
Cow position: chr1:42736754-42737027 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 226-496
Cow position: chr1:49973888-49973616 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr1:58336137-58336410 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 243

Conread position: 226-496
Cow position: chr1:58883765-58883493 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr1:69922136-69921863 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 243

Conread position: 226-496
Cow position: chr1:79456670-79456398 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 242

Conread position: 226-496
Cow position: chr1:82923877-82923605 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr1:85780478-85780205 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 226-496
Cow position: chr1:86698915-86698643 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr1:88131073-88131346 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 226-496
Cow position: chr1:91892821-91892547 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 244

Conread position: 226-496
Cow position: chr1:99913719-99913992 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 227-492
Cow position: chr1:57366829-57366557 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 7, 32

Conread position: 227-495
Cow position: chr1:72186574-72186308 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 205

Conread position: 227-496
Cow position: chr1:18027462-18027188 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 142, 25

Conread position: 227-496
Cow position: chr1:76752350-76752077 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 243

Conread position: 233-361
Cow position: chr1:59674765-59674892 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 233-453
Cow position: chr1:33712379-33712598 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 235-360
Cow position: chr1:87207111-87206987 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 235-496
Cow position: chr1:8825362-8825624 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 113

Conread position: 235-496
Cow position: chr1:28873386-28873649 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 23

Conread position: 235-496
Cow position: chr1:72081091-72081352 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 240-496
Cow position: chr1:48246161-48246406 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 116

Conread position: 246-496
Cow position: chr1:31365761-31365518 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 253-445
Cow position: chr1:102549569-102549761 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 156
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 128, 143

Conread position: 253-496
Cow position: chr1:5355453-5355695 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 253-496
Cow position: chr1:29362623-29362866 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 128, 208

Conread position: 253-496
Cow position: chr1:33851604-33851854 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 220

Conread position: 253-496
Cow position: chr1:40684364-40684128 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 67, 0

Conread position: 253-496
Cow position: chr1:53198876-53199119 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 212

Conread position: 253-496
Cow position: chr1:82652980-82653234 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 131, 220

Conread position: 253-496
Cow position: chr1:85792013-85792250 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 114, 0

Conread position: 253-496
Cow position: chr1:86547808-86547570 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 91

Conread position: 254-492
Cow position: chr1:43571073-43570840 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 191, 14

Conread position: 255-496
Cow position: chr1:77511601-77511356 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 110, 56

Conread position: 258-496
Cow position: chr1:20829221-20829458 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 259-444
Cow position: chr1:30283210-30283026 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 171, 0

Conread position: 259-485
Cow position: chr1:95239702-95239927 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 202

Conread position: 259-490
Cow position: chr1:8554661-8554890 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 259-491
Cow position: chr1:91899329-91899560 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-495
Cow position: chr1:67834808-67834573 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 157

Conread position: 259-495
Cow position: chr1:69766795-69767030 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 206, 0

Conread position: 259-495
Cow position: chr1:89425906-89426141 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:11291773-11291539 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 259-496
Cow position: chr1:17012406-17012170 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:17036224-17035990 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 89

Conread position: 259-496
Cow position: chr1:18880060-18879825 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 259-496
Cow position: chr1:21087746-21087982 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:28711249-28711485 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 259-496
Cow position: chr1:31397023-31397259 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:39544102-39544338 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 207

Conread position: 259-496
Cow position: chr1:40053688-40053923 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 259-496
Cow position: chr1:40574546-40574782 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:56490183-56490420 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 259-496
Cow position: chr1:71562240-71562004 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:80358848-80358612 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:82564836-82565072 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr1:82912811-82912575 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 262-496
Cow position: chr1:60339641-60339871 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 263-496
Cow position: chr1:13450543-13450773 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 125

Conread position: 264-439
Cow position: chr1:61309349-61309524 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 264-487
Cow position: chr1:82366523-82366744 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.