Cow genome map
| Conread name: | rhea37_k16.y1 |
| Conread position: | 82-483 |
| Cow position: | chr15:21449479-21449856 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 85-296 |
| Cow position: | chr15:23264848-23265051 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 74 |
| Conread position: | 85-406 |
| Cow position: | chr15:12615259-12615563 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 167, 56 |
| Conread position: | 85-454 |
| Cow position: | chr15:1664269-1664613 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 87-299 |
| Cow position: | chr15:35648132-35647922 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 108 |
| Conread position: | 93-299 |
| Cow position: | chr15:369572-369369 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 106 |
| Conread position: | 93-441 |
| Cow position: | chr15:36642724-36643059 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 64 |
| Conread position: | 97-496 |
| Cow position: | chr15:24794153-24794528 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 103 |
| Conread position: | 109-496 |
| Cow position: | chr15:19817775-19818141 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 111-490 |
| Cow position: | chr15:40105674-40106033 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 15 |
| Conread position: | 114-329 |
| Cow position: | chr15:8408770-8408985 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-377 |
| Cow position: | chr15:11298594-11298336 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 79 |
| Conread position: | 139-493 |
| Cow position: | chr15:51714786-51715135 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 143-496 |
| Cow position: | chr15:35735406-35735750 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 203-454 |
| Cow position: | chr15:7966084-7965827 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 226 |
| Conread position: | 204-454 |
| Cow position: | chr15:32507750-32507498 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 205-494 |
| Cow position: | chr15:32673659-32673375 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 207-496 |
| Cow position: | chr15:36626398-36626106 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 218-496 |
| Cow position: | chr15:12421265-12420985 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 219-496 |
| Cow position: | chr15:4961545-4961819 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 221-351 |
| Cow position: | chr15:17271489-17271359 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 221-360 |
| Cow position: | chr15:10787221-10787082 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 221-490 |
| Cow position: | chr15:8099391-8099652 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 222-360 |
| Cow position: | chr15:38195396-38195534 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 224-496 |
| Cow position: | chr15:6593039-6592777 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 225-360 |
| Cow position: | chr15:6369866-6369731 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 226-495 |
| Cow position: | chr15:19738146-19737874 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-495 |
| Cow position: | chr15:42936621-42936887 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 129 |
| Conread position: | 226-496 |
| Cow position: | chr15:4922058-4922330 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 226-496 |
| Cow position: | chr15:6156046-6155769 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 226-496 |
| Cow position: | chr15:15347212-15346940 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 148 |
| Conread position: | 226-496 |
| Cow position: | chr15:21665839-21665566 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-496 |
| Cow position: | chr15:31358793-31359066 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-496 |
| Cow position: | chr15:32494479-32494207 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 226-496 |
| Cow position: | chr15:51216496-51216765 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 227-496 |
| Cow position: | chr15:2076556-2076827 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 148 |
| Conread position: | 227-496 |
| Cow position: | chr15:18576622-18576893 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 233-496 |
| Cow position: | chr15:10888525-10888791 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 235-490 |
| Cow position: | chr15:8750343-8750597 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 236-471 |
| Cow position: | chr15:53338942-53339172 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 243-496 |
| Cow position: | chr15:1764014-1764271 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 244-496 |
| Cow position: | chr15:24295022-24295274 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 252-496 |
| Cow position: | chr15:7837181-7837424 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 209 |
| Conread position: | 252-496 |
| Cow position: | chr15:44069861-44070102 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 149, 51 |
| Conread position: | 253-389 |
| Cow position: | chr15:1782186-1782321 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 253-399 |
| Cow position: | chr15:4682169-4682314 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 253-463 |
| Cow position: | chr15:41366109-41366317 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 253-496 |
| Cow position: | chr15:1519218-1518976 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr15:4196395-4196636 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 253-496 |
| Cow position: | chr15:17080270-17080028 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 191, 208 |
| Conread position: | 253-496 |
| Cow position: | chr15:17292376-17292622 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 116, 212 |
| Conread position: | 258-377 |
| Cow position: | chr15:6553913-6553794 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-480 |
| Cow position: | chr15:7544825-7545041 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 258-496 |
| Cow position: | chr15:42320484-42320248 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 259-478 |
| Cow position: | chr15:2012020-2012236 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 259-491 |
| Cow position: | chr15:29009777-29010008 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-495 |
| Cow position: | chr15:50124004-50123769 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 202 |
| Conread position: | 259-495 |
| Cow position: | chr15:50147016-50147240 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 186, 156 |
| Conread position: | 259-496 |
| Cow position: | chr15:56424-56665 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 133 |
| Conread position: | 259-496 |
| Cow position: | chr15:1772436-1772672 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr15:1882568-1882332 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr15:2647718-2647481 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 207 |
| Conread position: | 259-496 |
| Cow position: | chr15:3009913-3009678 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 259-496 |
| Cow position: | chr15:36077185-36077421 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr15:36970862-36971095 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 262-496 |
| Cow position: | chr15:1834521-1834293 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 109, 151 |
| Conread position: | 263-496 |
| Cow position: | chr15:28490199-28489969 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 273-496 |
| Cow position: | chr15:369202-368985 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.