Cow genome map
| Conread name: | rhea37_k16.y1 |
| Conread position: | 72-491 |
| Cow position: | chr2:20920789-20920398 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 81-487 |
| Cow position: | chr2:42333197-42332813 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 81 |
| Conread position: | 85-496 |
| Cow position: | chr2:36053344-36052936 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 86-331 |
| Cow position: | chr2:16289218-16289448 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 190, 34 |
| Conread position: | 86-430 |
| Cow position: | chr2:28747817-28748148 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 178, 70 |
| Conread position: | 86-465 |
| Cow position: | chr2:7902686-7903049 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 52 |
| Conread position: | 86-492 |
| Cow position: | chr2:35355352-35355757 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 87-415 |
| Cow position: | chr2:39622290-39622606 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 98 |
| Conread position: | 88-415 |
| Cow position: | chr2:1362825-1363144 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 111 |
| Conread position: | 93-284 |
| Cow position: | chr2:782063-781881 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 102 |
| Conread position: | 97-415 |
| Cow position: | chr2:34564934-34564617 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 89 |
| Conread position: | 97-477 |
| Cow position: | chr2:36030666-36030301 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 99-496 |
| Cow position: | chr2:5963413-5963017 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 102-494 |
| Cow position: | chr2:63977989-63978369 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 106-473 |
| Cow position: | chr2:11729558-11729904 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 107-306 |
| Cow position: | chr2:15060852-15060664 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 109-320 |
| Cow position: | chr2:14778432-14778219 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 109-490 |
| Cow position: | chr2:53553457-53553824 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 113-386 |
| Cow position: | chr2:63292445-63292177 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 90, 80 |
| Conread position: | 213-441 |
| Cow position: | chr2:32655136-32655365 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 214-496 |
| Cow position: | chr2:28793043-28793317 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 10 |
| Conread position: | 214-496 |
| Cow position: | chr2:53329538-53329819 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 220-485 |
| Cow position: | chr2:52062454-52062719 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 171 |
| Conread position: | 220-487 |
| Cow position: | chr2:5905076-5904808 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 220-496 |
| Cow position: | chr2:11159340-11159062 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 244 |
| Conread position: | 225-372 |
| Cow position: | chr2:2363982-2364127 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 225-496 |
| Cow position: | chr2:198996-198727 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 226-473 |
| Cow position: | chr2:12224522-12224272 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-496 |
| Cow position: | chr2:8118328-8118601 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-496 |
| Cow position: | chr2:10186441-10186171 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 126 |
| Conread position: | 226-496 |
| Cow position: | chr2:16900041-16900314 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 239 |
| Conread position: | 226-496 |
| Cow position: | chr2:28650439-28650169 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 125 |
| Conread position: | 226-496 |
| Cow position: | chr2:50983437-50983165 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 159 |
| Conread position: | 227-457 |
| Cow position: | chr2:44497665-44497433 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 227-496 |
| Cow position: | chr2:10268867-10268596 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 242 |
| Conread position: | 227-496 |
| Cow position: | chr2:13045913-13045641 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 242 |
| Conread position: | 227-496 |
| Cow position: | chr2:36980168-36980440 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 235-375 |
| Cow position: | chr2:44346517-44346657 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 235-409 |
| Cow position: | chr2:4926374-4926197 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 235-496 |
| Cow position: | chr2:24146661-24146923 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 235-496 |
| Cow position: | chr2:65938648-65938387 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 240-496 |
| Cow position: | chr2:26921488-26921734 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 253-394 |
| Cow position: | chr2:572859-572998 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 253-434 |
| Cow position: | chr2:2184440-2184261 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 253-434 |
| Cow position: | chr2:78762283-78762456 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 253-485 |
| Cow position: | chr2:5870535-5870305 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 253-496 |
| Cow position: | chr2:2412980-2412738 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr2:41172493-41172729 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 253-496 |
| Cow position: | chr2:41686330-41686567 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 191, 74 |
| Conread position: | 253-496 |
| Cow position: | chr2:49472063-49472305 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 208 |
| Conread position: | 258-496 |
| Cow position: | chr2:2380929-2381165 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 259-395 |
| Cow position: | chr2:51990708-51990573 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 259-395 |
| Cow position: | chr2:57141864-57141728 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-491 |
| Cow position: | chr2:39421401-39421630 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 259-495 |
| Cow position: | chr2:51990426-51990192 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:3324742-3324502 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 210 |
| Conread position: | 259-496 |
| Cow position: | chr2:4403335-4403099 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:5474338-5474574 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:9907735-9907971 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 202 |
| Conread position: | 259-496 |
| Cow position: | chr2:10611804-10611573 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:25030654-25030422 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 186, 129 |
| Conread position: | 259-496 |
| Cow position: | chr2:47038592-47038356 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:49590223-49590459 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:52616292-52616528 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:54737328-54737564 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:57335018-57335254 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:57588518-57588754 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:59413858-59413623 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 259-496 |
| Cow position: | chr2:80955814-80955578 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 267-496 |
| Cow position: | chr2:19011177-19011405 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 194 |
| Conread position: | 276-496 |
| Cow position: | chr2:80293108-80292889 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
Show alignments to all cow chromosomes.