Cow genome map
| Conread name: | rhea37_k16.y1 |
| Conread position: | 64-494 |
| Cow position: | chr3:18356458-18356051 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 91 |
| Conread position: | 72-482 |
| Cow position: | chr3:64357800-64357411 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 72-486 |
| Cow position: | chr3:75047752-75047359 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 83-334 |
| Cow position: | chr3:46015699-46015933 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 85-317 |
| Cow position: | chr3:19691080-19690867 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 167, 52 |
| Conread position: | 85-490 |
| Cow position: | chr3:12679981-12679576 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 86-472 |
| Cow position: | chr3:24591266-24590898 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 112 |
| Conread position: | 86-473 |
| Cow position: | chr3:66991142-66991520 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 88-495 |
| Cow position: | chr3:52864083-52863684 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 49 |
| Conread position: | 93-491 |
| Cow position: | chr3:15178767-15179144 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 97-494 |
| Cow position: | chr3:6685864-6686258 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 98 |
| Conread position: | 102-486 |
| Cow position: | chr3:83233175-83232796 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 95 |
| Conread position: | 107-260 |
| Cow position: | chr3:29597137-29597285 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 111-492 |
| Cow position: | chr3:48230375-48230022 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 25 |
| Conread position: | 115-484 |
| Cow position: | chr3:21148641-21148281 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 126-386 |
| Cow position: | chr3:50127628-50127363 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 69 |
| Conread position: | 127-496 |
| Cow position: | chr3:58947723-58948076 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 147-494 |
| Cow position: | chr3:49333894-49334233 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 164-387 |
| Cow position: | chr3:2710820-2710599 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 203-490 |
| Cow position: | chr3:49272336-49272044 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 180 |
| Conread position: | 204-495 |
| Cow position: | chr3:63003387-63003096 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 207-490 |
| Cow position: | chr3:21304633-21304351 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 209-492 |
| Cow position: | chr3:18463404-18463122 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 218-495 |
| Cow position: | chr3:5883710-5883990 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 221-343 |
| Cow position: | chr3:66638917-66639043 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 222-347 |
| Cow position: | chr3:40157327-40157204 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 224-438 |
| Cow position: | chr3:26836583-26836382 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 225-372 |
| Cow position: | chr3:2654291-2654438 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 225-375 |
| Cow position: | chr3:5829442-5829293 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 225-388 |
| Cow position: | chr3:41000298-41000453 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 13 |
| Conread position: | 225-490 |
| Cow position: | chr3:49677975-49678238 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 226-409 |
| Cow position: | chr3:48060651-48060463 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-496 |
| Cow position: | chr3:5954005-5953734 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 226-496 |
| Cow position: | chr3:10239834-10240108 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 234 |
| Conread position: | 226-496 |
| Cow position: | chr3:18542227-18541955 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 195 |
| Conread position: | 226-496 |
| Cow position: | chr3:19756778-19756504 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 240 |
| Conread position: | 226-496 |
| Cow position: | chr3:34030718-34030445 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 226-496 |
| Cow position: | chr3:36881741-36881465 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 246 |
| Conread position: | 226-496 |
| Cow position: | chr3:40823568-40823840 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 226-496 |
| Cow position: | chr3:57484549-57484278 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 226-496 |
| Cow position: | chr3:59861547-59861819 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 226-496 |
| Cow position: | chr3:78027229-78026972 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 228-496 |
| Cow position: | chr3:5995519-5995249 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 198 |
| Conread position: | 233-333 |
| Cow position: | chr3:66119849-66119948 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 233-496 |
| Cow position: | chr3:7481043-7480782 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 235-496 |
| Cow position: | chr3:594767-595030 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 233 |
| Conread position: | 235-496 |
| Cow position: | chr3:49137348-49137094 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 240-496 |
| Cow position: | chr3:45895361-45895094 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 8, 107 |
| Conread position: | 240-496 |
| Cow position: | chr3:45974694-45974959 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 107 |
| Conread position: | 243-496 |
| Cow position: | chr3:72630268-72630521 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 244-493 |
| Cow position: | chr3:50011873-50012120 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 220, 108 |
| Conread position: | 253-491 |
| Cow position: | chr3:18859619-18859854 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 253-494 |
| Cow position: | chr3:36117867-36118106 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr3:3523226-3523466 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 253-496 |
| Cow position: | chr3:29331066-29330824 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr3:32622832-32622590 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr3:40339907-40339665 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 253-496 |
| Cow position: | chr3:41211532-41211288 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 210 |
| Conread position: | 253-496 |
| Cow position: | chr3:46679636-46679877 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 253-496 |
| Cow position: | chr3:49613772-49613529 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 209 |
| Conread position: | 259-485 |
| Cow position: | chr3:68699762-68699536 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 78, 207 |
| Conread position: | 259-494 |
| Cow position: | chr3:68873544-68873309 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 207 |
| Conread position: | 259-495 |
| Cow position: | chr3:2917672-2917906 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 259-495 |
| Cow position: | chr3:37969259-37969491 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:1516366-1516602 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:19736791-19737027 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:20380754-20380990 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:22336099-22336335 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:24314678-24314913 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:46861092-46860856 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:64027875-64027639 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 259-496 |
| Cow position: | chr3:64650837-64651073 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 202 |
| Conread position: | 259-496 |
| Cow position: | chr3:66890752-66890516 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 186, 202 |
| Conread position: | 262-496 |
| Cow position: | chr3:6782598-6782830 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 262-496 |
| Cow position: | chr3:19878871-19879104 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 273-496 |
| Cow position: | chr3:74439528-74439750 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 276-490 |
| Cow position: | chr3:77548952-77549160 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.