Cow genome map

Conread name: rhea37_k16.y1

Conread position: 64-494
Cow position: chr3:18356458-18356051 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 91

Conread position: 72-482
Cow position: chr3:64357800-64357411 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 15

Conread position: 72-486
Cow position: chr3:75047752-75047359 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 270
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 26

Conread position: 83-334
Cow position: chr3:46015699-46015933 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 74, 0

Conread position: 85-317
Cow position: chr3:19691080-19690867 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 167, 52

Conread position: 85-490
Cow position: chr3:12679981-12679576 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 6

Conread position: 86-472
Cow position: chr3:24591266-24590898 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 112

Conread position: 86-473
Cow position: chr3:66991142-66991520 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 88-495
Cow position: chr3:52864083-52863684 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 49

Conread position: 93-491
Cow position: chr3:15178767-15179144 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 97-494
Cow position: chr3:6685864-6686258 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 98

Conread position: 102-486
Cow position: chr3:83233175-83232796 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 95

Conread position: 107-260
Cow position: chr3:29597137-29597285 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 90

Conread position: 111-492
Cow position: chr3:48230375-48230022 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 25

Conread position: 115-484
Cow position: chr3:21148641-21148281 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 47

Conread position: 126-386
Cow position: chr3:50127628-50127363 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 126, 69

Conread position: 127-496
Cow position: chr3:58947723-58948076 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 18

Conread position: 147-494
Cow position: chr3:49333894-49334233 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 14

Conread position: 164-387
Cow position: chr3:2710820-2710599 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 136
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 89, 15

Conread position: 203-490
Cow position: chr3:49272336-49272044 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 180

Conread position: 204-495
Cow position: chr3:63003387-63003096 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 154

Conread position: 207-490
Cow position: chr3:21304633-21304351 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 24

Conread position: 209-492
Cow position: chr3:18463404-18463122 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 106

Conread position: 218-495
Cow position: chr3:5883710-5883990 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 98

Conread position: 221-343
Cow position: chr3:66638917-66639043 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 13, 5

Conread position: 222-347
Cow position: chr3:40157327-40157204 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 224-438
Cow position: chr3:26836583-26836382 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 225-372
Cow position: chr3:2654291-2654438 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 32

Conread position: 225-375
Cow position: chr3:5829442-5829293 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 32

Conread position: 225-388
Cow position: chr3:41000298-41000453 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 13

Conread position: 225-490
Cow position: chr3:49677975-49678238 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 226-409
Cow position: chr3:48060651-48060463 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 153
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 8, 0

Conread position: 226-496
Cow position: chr3:5954005-5953734 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr3:10239834-10240108 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 234

Conread position: 226-496
Cow position: chr3:18542227-18541955 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 195

Conread position: 226-496
Cow position: chr3:19756778-19756504 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 240

Conread position: 226-496
Cow position: chr3:34030718-34030445 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 226-496
Cow position: chr3:36881741-36881465 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 246

Conread position: 226-496
Cow position: chr3:40823568-40823840 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 54

Conread position: 226-496
Cow position: chr3:57484549-57484278 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 226-496
Cow position: chr3:59861547-59861819 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 54

Conread position: 226-496
Cow position: chr3:78027229-78026972 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 8, 135

Conread position: 228-496
Cow position: chr3:5995519-5995249 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 198

Conread position: 233-333
Cow position: chr3:66119849-66119948 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 233-496
Cow position: chr3:7481043-7480782 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 16

Conread position: 235-496
Cow position: chr3:594767-595030 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 233

Conread position: 235-496
Cow position: chr3:49137348-49137094 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 139

Conread position: 240-496
Cow position: chr3:45895361-45895094 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 8, 107

Conread position: 240-496
Cow position: chr3:45974694-45974959 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 107

Conread position: 243-496
Cow position: chr3:72630268-72630521 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 36

Conread position: 244-493
Cow position: chr3:50011873-50012120 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 220, 108

Conread position: 253-491
Cow position: chr3:18859619-18859854 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 93

Conread position: 253-494
Cow position: chr3:36117867-36118106 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 253-496
Cow position: chr3:3523226-3523466 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 253-496
Cow position: chr3:29331066-29330824 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 253-496
Cow position: chr3:32622832-32622590 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 253-496
Cow position: chr3:40339907-40339665 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 253-496
Cow position: chr3:41211532-41211288 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 210

Conread position: 253-496
Cow position: chr3:46679636-46679877 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 253-496
Cow position: chr3:49613772-49613529 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 209

Conread position: 259-485
Cow position: chr3:68699762-68699536 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 78, 207

Conread position: 259-494
Cow position: chr3:68873544-68873309 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 207

Conread position: 259-495
Cow position: chr3:2917672-2917906 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 259-495
Cow position: chr3:37969259-37969491 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 259-496
Cow position: chr3:1516366-1516602 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 259-496
Cow position: chr3:19736791-19737027 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 259-496
Cow position: chr3:20380754-20380990 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr3:22336099-22336335 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr3:24314678-24314913 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr3:46861092-46860856 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr3:64027875-64027639 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 259-496
Cow position: chr3:64650837-64651073 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 202

Conread position: 259-496
Cow position: chr3:66890752-66890516 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 186, 202

Conread position: 262-496
Cow position: chr3:6782598-6782830 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 262-496
Cow position: chr3:19878871-19879104 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 273-496
Cow position: chr3:74439528-74439750 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 276-490
Cow position: chr3:77548952-77549160 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 0

Show alignments to all cow chromosomes.