Cow genome map
| Conread name: | rhlv16b_j11.y1 |
| Conread position: | 1-154 |
| Cow position: | chr12:14568568-14568726 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-154 |
| Cow position: | chr12:25313467-25313624 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-169 |
| Cow position: | chr12:27929545-27929718 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-169 |
| Cow position: | chr12:41337986-41338159 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:551568-551744 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:3717027-3717203 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:8674819-8674995 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:10931331-10931156 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 1-172 |
| Cow position: | chr12:11101494-11101319 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 1-172 |
| Cow position: | chr12:12754910-12755086 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:20459473-20459648 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:21718931-21719106 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 107, 85 |
| Conread position: | 1-172 |
| Cow position: | chr12:25097019-25097195 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:27506403-27506579 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:27852695-27852874 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:34176611-34176435 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:38893610-38893434 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:42232556-42232380 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-173 |
| Cow position: | chr12:14423596-14423419 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr12:19198282-19198113 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-173 |
| Cow position: | chr12:35547882-35548057 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 93 |
| Conread position: | 1-176 |
| Cow position: | chr12:758667-758487 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 133 |
| Conread position: | 1-176 |
| Cow position: | chr12:1007262-1007082 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:1511517-1511697 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:5713210-5713030 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:10358942-10358762 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:15231281-15231101 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-176 |
| Cow position: | chr12:19040860-19040681 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 177 |
| Conread position: | 1-176 |
| Cow position: | chr12:21665382-21665202 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:22517606-22517785 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 85 |
| Conread position: | 1-176 |
| Cow position: | chr12:22594011-22593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:23138082-23138262 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:23511931-23512112 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:25148372-25148551 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 1-176 |
| Cow position: | chr12:25266087-25266266 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 152 |
| Conread position: | 1-176 |
| Cow position: | chr12:27614662-27614482 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:28012985-28013165 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:32147383-32147561 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:45145299-45145119 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr12:46111871-46112051 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 170-506 |
| Cow position: | chr12:347649-347997 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 315 |
| Conread position: | 175-454 |
| Cow position: | chr12:2282379-2282662 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 125, 149 |
| Conread position: | 175-454 |
| Cow position: | chr12:21254823-21254540 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 135, 159 |
| Conread position: | 175-460 |
| Cow position: | chr12:32653377-32653665 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-465 |
| Cow position: | chr12:21499951-21500236 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 175-467 |
| Cow position: | chr12:27933113-27932816 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-469 |
| Cow position: | chr12:22332454-22332755 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 175-470 |
| Cow position: | chr12:3632422-3632133 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 135, 163 |
| Conread position: | 175-470 |
| Cow position: | chr12:8982584-8982292 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 166 |
| Conread position: | 175-470 |
| Cow position: | chr12:21426526-21426826 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-471 |
| Cow position: | chr12:21901779-21902072 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 137, 46 |
| Conread position: | 175-491 |
| Cow position: | chr12:37558387-37558708 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 127, 119 |
| Conread position: | 175-492 |
| Cow position: | chr12:26141646-26141967 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-516 |
| Cow position: | chr12:17975383-17975716 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 130 |
| Conread position: | 177-469 |
| Cow position: | chr12:45261449-45261754 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 168 |
Show alignments to all cow chromosomes.