Cow genome map
| Conread name: | rhlv16b_j11.y1 |
| Conread position: | 1-150 |
| Cow position: | chr13:38897352-38897198 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 1-161 |
| Cow position: | chr13:42114955-42115121 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-163 |
| Cow position: | chr13:50190033-50190200 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-168 |
| Cow position: | chr13:19843508-19843338 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-168 |
| Cow position: | chr13:34870998-34870826 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-169 |
| Cow position: | chr13:9048633-9048460 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-169 |
| Cow position: | chr13:20571671-20571845 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:3651406-3651581 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:4486891-4486715 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:6665090-6665266 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:11826714-11826890 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 1-172 |
| Cow position: | chr13:13902894-13902719 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 1-172 |
| Cow position: | chr13:14302948-14303121 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 84 |
| Conread position: | 1-172 |
| Cow position: | chr13:15921419-15921595 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:20484201-20484026 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 1-172 |
| Cow position: | chr13:32734149-32734325 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:34321942-34322112 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-172 |
| Cow position: | chr13:41337631-41337807 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 1-173 |
| Cow position: | chr13:3001313-3001481 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 1-173 |
| Cow position: | chr13:15429897-15430067 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 98, 47 |
| Conread position: | 1-173 |
| Cow position: | chr13:58718594-58718418 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 152 |
| Conread position: | 1-176 |
| Cow position: | chr13:504372-504192 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:561348-561528 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:2138140-2138320 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:2725769-2725952 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:3021447-3021627 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:3657312-3657492 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:6719126-6719306 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:7609183-7609002 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:8781946-8781766 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:13332916-13333096 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:17921475-17921655 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:19566759-19566578 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:22084808-22084634 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 158 |
| Conread position: | 1-176 |
| Cow position: | chr13:22907229-22907410 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 1-176 |
| Cow position: | chr13:23266791-23266971 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:31730533-31730713 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:33522920-33523100 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-176 |
| Cow position: | chr13:34051660-34051480 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:34376491-34376672 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:34905535-34905716 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:36936769-36936590 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 68 |
| Conread position: | 1-176 |
| Cow position: | chr13:50112504-50112324 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 1-176 |
| Cow position: | chr13:55337781-55337601 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr13:60646548-60646728 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-178 |
| Cow position: | chr13:33500901-33501084 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-187 |
| Cow position: | chr13:44323923-44324114 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 24-172 |
| Cow position: | chr13:32922295-32922448 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 167-468 |
| Cow position: | chr13:34187085-34186776 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 167-470 |
| Cow position: | chr13:54284185-54284480 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 175-462 |
| Cow position: | chr13:4940698-4940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-466 |
| Cow position: | chr13:2583689-2583401 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 175-470 |
| Cow position: | chr13:2908837-2908539 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 175-470 |
| Cow position: | chr13:3276769-3277065 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 152, 137 |
| Conread position: | 175-470 |
| Cow position: | chr13:6668512-6668212 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 118, 80 |
| Conread position: | 175-470 |
| Cow position: | chr13:31832213-31832511 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 175-470 |
| Cow position: | chr13:32986438-32986145 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 175-470 |
| Cow position: | chr13:56730670-56730375 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 175-471 |
| Cow position: | chr13:34692774-34693075 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 169 |
| Conread position: | 175-483 |
| Cow position: | chr13:31560801-31561110 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 175-491 |
| Cow position: | chr13:4872688-4873008 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-491 |
| Cow position: | chr13:17308086-17308406 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-491 |
| Cow position: | chr13:21840583-21840263 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 175-491 |
| Cow position: | chr13:30245122-30244802 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 123, 103 |
| Conread position: | 175-491 |
| Cow position: | chr13:49973294-49973615 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 176-287 |
| Cow position: | chr13:60703919-60703808 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-460 |
| Cow position: | chr13:2297185-2296898 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 121, 101 |
| Conread position: | 177-470 |
| Cow position: | chr13:60701663-60701382 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 202-470 |
| Cow position: | chr13:3567423-3567705 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 31 |
Show alignments to all cow chromosomes.