Cow genome map
| Conread name: | rhlv16b_j11.y1 |
| Conread position: | 1-141 |
| Cow position: | chr14:24797782-24797927 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-156 |
| Cow position: | chr14:13464305-13464140 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-162 |
| Cow position: | chr14:24980455-24980289 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-163 |
| Cow position: | chr14:28116969-28116796 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-168 |
| Cow position: | chr14:29773221-29773392 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-169 |
| Cow position: | chr14:10310467-10310294 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-169 |
| Cow position: | chr14:19489889-19489716 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-169 |
| Cow position: | chr14:34906433-34906261 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 93, 144 |
| Conread position: | 1-170 |
| Cow position: | chr14:11151008-11151182 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:7475765-7475589 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:12740141-12740317 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:12833758-12833584 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 1-172 |
| Cow position: | chr14:12903242-12903066 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:16916819-16916995 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:16997130-16997306 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-172 |
| Cow position: | chr14:19325351-19325527 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:21596508-21596678 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:22026866-22027040 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 1-172 |
| Cow position: | chr14:28993440-28993616 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:35419779-35419609 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:37227081-37226905 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-172 |
| Cow position: | chr14:41220140-41220316 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr14:44026907-44027084 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 102, 93 |
| Conread position: | 1-172 |
| Cow position: | chr14:50069290-50069460 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-173 |
| Cow position: | chr14:13860633-13860810 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-173 |
| Cow position: | chr14:17757132-17757309 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-173 |
| Cow position: | chr14:38435939-38435762 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr14:41478657-41478480 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-173 |
| Cow position: | chr14:45789879-45789702 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:2289161-2288981 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:5645314-5645134 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:8102765-8102944 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 108 |
| Conread position: | 1-176 |
| Cow position: | chr14:9449624-9449805 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:9482859-9482679 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:11462172-11462352 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:12616343-12616523 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:13236891-13237071 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:24922691-24922511 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 1-176 |
| Cow position: | chr14:28350790-28350970 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:29044765-29044945 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:34629287-34629467 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:40345425-40345247 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 65 |
| Conread position: | 1-176 |
| Cow position: | chr14:40969063-40968883 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:42150381-42150202 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 101, 93 |
| Conread position: | 1-176 |
| Cow position: | chr14:44367585-44367405 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:46124017-46123842 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 1-176 |
| Cow position: | chr14:46960295-46960115 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr14:48491477-48491295 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 98, 155 |
| Conread position: | 159-494 |
| Cow position: | chr14:21743073-21743413 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 167-470 |
| Cow position: | chr14:44855946-44855640 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 167-491 |
| Cow position: | chr14:33394297-33393969 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 169-463 |
| Cow position: | chr14:47589357-47589651 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 183, 40 |
| Conread position: | 172-420 |
| Cow position: | chr14:33235484-33235720 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 180, 53 |
| Conread position: | 172-503 |
| Cow position: | chr14:47654230-47654561 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 128 |
| Conread position: | 175-354 |
| Cow position: | chr14:47921494-47921670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 175-454 |
| Cow position: | chr14:44685536-44685814 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 175-459 |
| Cow position: | chr14:47640635-47640917 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 57 |
| Conread position: | 175-460 |
| Cow position: | chr14:13272746-13273028 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 177, 130 |
| Conread position: | 175-468 |
| Cow position: | chr14:45850713-45851007 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 98 |
| Conread position: | 175-469 |
| Cow position: | chr14:13326638-13326355 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 83 |
| Conread position: | 175-470 |
| Cow position: | chr14:9045053-9045353 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-470 |
| Cow position: | chr14:20781944-20782243 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-470 |
| Cow position: | chr14:23256847-23257146 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 175-470 |
| Cow position: | chr14:23901313-23901013 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-470 |
| Cow position: | chr14:45672557-45672257 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-470 |
| Cow position: | chr14:45767494-45767789 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 151, 137 |
| Conread position: | 175-491 |
| Cow position: | chr14:17491969-17491649 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 175-494 |
| Cow position: | chr14:750057-750380 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-494 |
| Cow position: | chr14:44225897-44226207 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 175-495 |
| Cow position: | chr14:23260442-23260111 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 175-495 |
| Cow position: | chr14:38816711-38816394 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 71 |
| Conread position: | 176-470 |
| Cow position: | chr14:46464559-46464860 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 118, 168 |
| Conread position: | 176-496 |
| Cow position: | chr14:30707179-30706874 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 129, 159 |
| Conread position: | 177-490 |
| Cow position: | chr14:30596891-30596577 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 129, 169 |
| Conread position: | 177-496 |
| Cow position: | chr14:43552912-43553234 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 55 |
| Conread position: | 210-505 |
| Cow position: | chr14:41407344-41407644 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 98, 124 |
Show alignments to all cow chromosomes.