Cow genome map

Conread name: rhlv16b_j11.y1

Conread position: 1-106
Cow position: chr21:46831140-46831246 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 1-141
Cow position: chr21:39400662-39400522 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 86

Conread position: 1-151
Cow position: chr21:37122988-37123145 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 52

Conread position: 1-152
Cow position: chr21:4898538-4898694 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-154
Cow position: chr21:27375532-27375373 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 99, 115

Conread position: 1-163
Cow position: chr21:19627282-19627448 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 98, 85

Conread position: 1-169
Cow position: chr21:2664739-2664909 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 93, 148

Conread position: 1-169
Cow position: chr21:27608276-27608447 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 49

Conread position: 1-169
Cow position: chr21:30595664-30595837 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-169
Cow position: chr21:47360743-47360916 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 1-170
Cow position: chr21:6864134-6864303 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 87

Conread position: 1-172
Cow position: chr21:149573-149397 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr21:2768417-2768593 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr21:3782199-3782023 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr21:3804354-3804530 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 55, 59

Conread position: 1-172
Cow position: chr21:10570713-10570537 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 107, 92

Conread position: 1-172
Cow position: chr21:17144114-17143939 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 170

Conread position: 1-172
Cow position: chr21:28915549-28915719 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 93, 139

Conread position: 1-172
Cow position: chr21:31512844-31513019 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 107, 93

Conread position: 1-172
Cow position: chr21:36534782-36534958 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr21:43404011-43404187 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 1-173
Cow position: chr21:4035836-4036014 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 1-173
Cow position: chr21:4812912-4813088 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 65

Conread position: 1-173
Cow position: chr21:28259095-28258919 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 24

Conread position: 1-173
Cow position: chr21:39428828-39428651 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-173
Cow position: chr21:44219105-44218924 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 93

Conread position: 1-176
Cow position: chr21:449594-449414 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:2514277-2514097 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:4188962-4188782 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 107, 75

Conread position: 1-176
Cow position: chr21:6966046-6966226 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:9895788-9895608 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:11509367-11509187 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:14727113-14726937 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 104, 69

Conread position: 1-176
Cow position: chr21:18285232-18285051 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 154

Conread position: 1-176
Cow position: chr21:18846908-18847088 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:19351435-19351615 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:22463617-22463437 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:22855339-22855159 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:25472625-25472445 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 62

Conread position: 1-176
Cow position: chr21:27342972-27343153 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 153

Conread position: 1-176
Cow position: chr21:28476381-28476561 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:30966517-30966697 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:33983849-33984028 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 98, 159

Conread position: 1-176
Cow position: chr21:34180671-34180851 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 93

Conread position: 1-176
Cow position: chr21:36506412-36506592 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:41796295-41796475 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr21:42917219-42917040 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 169

Conread position: 1-176
Cow position: chr21:47532160-47531983 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 65, 130

Conread position: 1-176
Cow position: chr21:47977693-47977513 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-179
Cow position: chr21:33965293-33965477 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 1-504
Cow position: chr21:37147358-37147849 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 58

Conread position: 3-176
Cow position: chr21:18824246-18824424 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 160-470
Cow position: chr21:4456818-4457133 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 135

Conread position: 170-465
Cow position: chr21:3194398-3194680 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 62

Conread position: 172-363
Cow position: chr21:21517207-21517389 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 153
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 90, 0

Conread position: 172-495
Cow position: chr21:993012-992697 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 22

Conread position: 175-390
Cow position: chr21:3615299-3615519 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 137, 164

Conread position: 175-416
Cow position: chr21:2716674-2716429 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 137, 57

Conread position: 175-439
Cow position: chr21:25992620-25992357 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 137, 98

Conread position: 175-440
Cow position: chr21:34259212-34258953 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 94, 57

Conread position: 175-464
Cow position: chr21:4222680-4222387 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 137, 176

Conread position: 175-470
Cow position: chr21:1292170-1291884 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 182, 57

Conread position: 175-470
Cow position: chr21:2788984-2788685 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 132, 167

Conread position: 175-470
Cow position: chr21:8678353-8678053 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 135, 169

Conread position: 175-470
Cow position: chr21:11505594-11505894 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 85

Conread position: 175-470
Cow position: chr21:13123992-13123699 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 90, 136

Conread position: 175-470
Cow position: chr21:35596375-35596675 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 125, 169

Conread position: 175-470
Cow position: chr21:37044920-37045217 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 85

Conread position: 175-490
Cow position: chr21:4076852-4077165 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 137, 68

Conread position: 175-491
Cow position: chr21:2476503-2476200 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 79, 57

Conread position: 175-491
Cow position: chr21:6339573-6339893 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 135, 169

Conread position: 175-491
Cow position: chr21:11453649-11453329 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr21:12055993-12055674 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 210
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr21:39425070-39425390 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 207
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 79, 85

Conread position: 175-503
Cow position: chr21:23601206-23601534 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 30

Conread position: 176-468
Cow position: chr21:2416244-2416531 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 129, 67

Conread position: 177-470
Cow position: chr21:3426494-3426792 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 127, 0

Conread position: 177-470
Cow position: chr21:36714642-36714937 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 131, 59

Conread position: 189-451
Cow position: chr21:21947781-21947515 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 131, 115

Show alignments to all cow chromosomes.