Cow genome map
| Conread name: | rhlv16b_j11.y1 |
| Conread position: | 1-146 |
| Cow position: | chr22:15013436-15013585 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 131 |
| Conread position: | 1-148 |
| Cow position: | chr22:36503448-36503600 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 109, 93 |
| Conread position: | 1-153 |
| Cow position: | chr22:36207959-36207802 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-154 |
| Cow position: | chr22:20237321-20237479 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-155 |
| Cow position: | chr22:36595256-36595414 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 137 |
| Conread position: | 1-164 |
| Cow position: | chr22:1517789-1517957 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-164 |
| Cow position: | chr22:30189626-30189453 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-168 |
| Cow position: | chr22:17325249-17325415 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-169 |
| Cow position: | chr22:19048518-19048695 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-169 |
| Cow position: | chr22:29184867-29185040 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-169 |
| Cow position: | chr22:36858283-36858456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-169 |
| Cow position: | chr22:42500113-42500282 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-170 |
| Cow position: | chr22:31315796-31315622 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:3433710-3433886 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:15308710-15308886 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:18603558-18603734 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:19140452-19140627 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 152 |
| Conread position: | 1-172 |
| Cow position: | chr22:29397337-29397161 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:31331619-31331795 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr22:39465288-39465464 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:9728720-9728897 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:21192949-21193126 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:30675474-30675651 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:34615293-34615116 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr22:43236090-43235913 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:288379-288558 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 113 |
| Conread position: | 1-176 |
| Cow position: | chr22:540387-540208 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 85 |
| Conread position: | 1-176 |
| Cow position: | chr22:697185-697004 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:699198-699019 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 131 |
| Conread position: | 1-176 |
| Cow position: | chr22:1483666-1483488 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 130 |
| Conread position: | 1-176 |
| Cow position: | chr22:2561217-2561397 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:5452905-5452725 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:8339670-8339490 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:8881399-8881219 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:9371611-9371431 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 153 |
| Conread position: | 1-176 |
| Cow position: | chr22:10550119-10549939 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:10577235-10577415 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:10906952-10907132 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:12869203-12869384 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:13721478-13721658 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:22107296-22107116 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:22862843-22862663 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:25336404-25336224 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:25340406-25340226 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 1-176 |
| Cow position: | chr22:29855102-29854924 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:31598557-31598383 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 1-176 |
| Cow position: | chr22:32220713-32220533 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:36584376-36584556 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-176 |
| Cow position: | chr22:37323522-37323350 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 160, 93 |
| Conread position: | 1-176 |
| Cow position: | chr22:40385892-40385712 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 178 |
| Conread position: | 1-176 |
| Cow position: | chr22:40589644-40589464 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 3-172 |
| Cow position: | chr22:6339904-6339731 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 167-453 |
| Cow position: | chr22:8136371-8136087 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 167-454 |
| Cow position: | chr22:27309948-27309655 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 175-271 |
| Cow position: | chr22:35943564-35943468 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-447 |
| Cow position: | chr22:20207347-20207073 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 175-460 |
| Cow position: | chr22:36183593-36183881 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-468 |
| Cow position: | chr22:33351003-33351300 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 232 |
| Conread position: | 175-470 |
| Cow position: | chr22:158068-157773 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 175-470 |
| Cow position: | chr22:5672571-5672871 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 180 |
| Conread position: | 175-470 |
| Cow position: | chr22:6503830-6503543 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 174, 89 |
| Conread position: | 175-470 |
| Cow position: | chr22:13917337-13917637 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 142, 198 |
| Conread position: | 175-470 |
| Cow position: | chr22:34606897-34607190 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 152 |
| Conread position: | 175-470 |
| Cow position: | chr22:36736597-36736892 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 169 |
| Conread position: | 175-490 |
| Cow position: | chr22:5933150-5932843 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 179, 136 |
| Conread position: | 175-491 |
| Cow position: | chr22:693466-693780 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 162, 130 |
| Conread position: | 175-491 |
| Cow position: | chr22:1878626-1878947 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-491 |
| Cow position: | chr22:3278519-3278200 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-491 |
| Cow position: | chr22:5233471-5233151 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 175-491 |
| Cow position: | chr22:10546479-10546799 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-491 |
| Cow position: | chr22:24949664-24949984 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 176-491 |
| Cow position: | chr22:35672520-35672202 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 135, 168 |
| Conread position: | 177-298 |
| Cow position: | chr22:41237728-41237847 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 177-469 |
| Cow position: | chr22:46547828-46547531 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 167 |
| Conread position: | 177-491 |
| Cow position: | chr22:44489723-44490041 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 178-419 |
| Cow position: | chr22:1321449-1321690 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 174, 161 |
| Conread position: | 178-468 |
| Cow position: | chr22:36267207-36267492 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 130, 160 |
Show alignments to all cow chromosomes.