Cow genome map
| Conread name: | rhlv16b_j11.y1 |
| Conread position: | 1-137 |
| Cow position: | chr24:10244209-10244349 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-152 |
| Cow position: | chr24:12119623-12119777 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 98, 130 |
| Conread position: | 1-152 |
| Cow position: | chr24:13491835-13491679 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-154 |
| Cow position: | chr24:7597220-7597378 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-154 |
| Cow position: | chr24:18112794-18112636 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-154 |
| Cow position: | chr24:22047730-22047886 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-163 |
| Cow position: | chr24:3793821-3793655 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-163 |
| Cow position: | chr24:29179705-29179534 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-169 |
| Cow position: | chr24:12348054-12348226 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:6020739-6020915 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:6035842-6036018 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:8607668-8607492 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:12090319-12090142 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:22975147-22974971 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-172 |
| Cow position: | chr24:33937268-33937092 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:6146632-6146457 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:14865691-14865873 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:14867617-14867799 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:17105538-17105715 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-173 |
| Cow position: | chr24:29181697-29181534 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:3850934-3850754 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:5653372-5653552 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 1-176 |
| Cow position: | chr24:5929118-5928938 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:6052421-6052243 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 10 |
| Conread position: | 1-176 |
| Cow position: | chr24:6524336-6524154 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:16081148-16081328 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:22794898-22794718 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:24249163-24249342 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 1-176 |
| Cow position: | chr24:25372442-25372262 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-176 |
| Cow position: | chr24:25698283-25698104 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 1-176 |
| Cow position: | chr24:36036487-36036667 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 1-176 |
| Cow position: | chr24:41062792-41062614 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 166 |
| Conread position: | 1-176 |
| Cow position: | chr24:43634453-43634277 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 1-177 |
| Cow position: | chr24:20604088-20603908 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 166 |
| Conread position: | 24-176 |
| Cow position: | chr24:14745680-14745523 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 172-427 |
| Cow position: | chr24:36297077-36297345 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 119, 138 |
| Conread position: | 172-496 |
| Cow position: | chr24:14873424-14873103 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 35 |
| Conread position: | 175-463 |
| Cow position: | chr24:9188811-9188518 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 135, 180 |
| Conread position: | 175-465 |
| Cow position: | chr24:36707771-36708061 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 175-468 |
| Cow position: | chr24:36560163-36559869 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 129, 166 |
| Conread position: | 175-470 |
| Cow position: | chr24:8030071-8030371 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 175-470 |
| Cow position: | chr24:33933286-33933586 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 175-471 |
| Cow position: | chr24:9092353-9092061 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 125, 169 |
| Conread position: | 175-491 |
| Cow position: | chr24:6025175-6024856 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 180 |
| Conread position: | 175-491 |
| Cow position: | chr24:6083937-6084257 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-491 |
| Cow position: | chr24:6515125-6514805 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 301 |
| Conread position: | 175-491 |
| Cow position: | chr24:12485397-12485077 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 175-491 |
| Cow position: | chr24:44017466-44017786 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 176-334 |
| Cow position: | chr24:6511211-6511044 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 176-470 |
| Cow position: | chr24:37216925-37217220 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 97, 125 |
| Conread position: | 176-491 |
| Cow position: | chr24:6434162-6434480 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 134, 168 |
| Conread position: | 177-470 |
| Cow position: | chr24:6145282-6145588 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 133, 279 |
Show alignments to all cow chromosomes.