Cow genome map

Conread name: rhlv16b_j11.y1

Conread position: 1-154
Cow position: chr4:2003571-2003729 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-154
Cow position: chr4:20243139-20242981 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-163
Cow position: chr4:20616735-20616902 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-166
Cow position: chr4:12454947-12454783 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 112

Conread position: 1-168
Cow position: chr4:12238251-12238417 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 109

Conread position: 1-169
Cow position: chr4:7214794-7214967 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 93

Conread position: 1-169
Cow position: chr4:63639138-63639311 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr4:1047281-1047457 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:10044784-10044960 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:10884623-10884447 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:16363183-16363007 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:17473070-17472892 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr4:18813227-18813403 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:23304358-23304534 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 99, 0

Conread position: 1-172
Cow position: chr4:25596502-25596678 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:29530474-29530650 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:31562248-31562424 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:44733605-44733433 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 105

Conread position: 1-172
Cow position: chr4:46711623-46711799 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr4:67680994-67681170 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 1-173
Cow position: chr4:6035044-6035221 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 1-173
Cow position: chr4:11100612-11100788 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 103, 0

Conread position: 1-173
Cow position: chr4:18099922-18100099 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 1-173
Cow position: chr4:22316708-22316531 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 98, 0

Conread position: 1-173
Cow position: chr4:27288121-27288299 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 1-173
Cow position: chr4:37703238-37703061 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 93

Conread position: 1-173
Cow position: chr4:47115819-47115641 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 1-176
Cow position: chr4:606588-606414 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 1-176
Cow position: chr4:1239439-1239615 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 98, 60

Conread position: 1-176
Cow position: chr4:2226780-2226961 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:3170265-3170084 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 1-176
Cow position: chr4:3252561-3252741 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:3284375-3284555 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:4086381-4086558 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 146
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 103, 59

Conread position: 1-176
Cow position: chr4:4419029-4418849 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:10122389-10122217 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 1-176
Cow position: chr4:10822885-10823065 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 65, 94

Conread position: 1-176
Cow position: chr4:11192938-11192758 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 95, 0

Conread position: 1-176
Cow position: chr4:14919040-14918860 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:17235004-17234824 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:21843537-21843717 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-176
Cow position: chr4:24139856-24139675 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 1-176
Cow position: chr4:26468214-26468035 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 104, 47

Conread position: 1-176
Cow position: chr4:26745501-26745324 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:32215137-32214957 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:35929465-35929285 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:37786285-37786105 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 93

Conread position: 1-176
Cow position: chr4:38583864-38583684 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:41037811-41037631 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:44778209-44778390 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 1-176
Cow position: chr4:44957428-44957608 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:51761010-51761190 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr4:54189753-54189579 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 124

Conread position: 1-176
Cow position: chr4:59783659-59783481 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 151

Conread position: 1-176
Cow position: chr4:65581498-65581318 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 93

Conread position: 1-176
Cow position: chr4:65918672-65918492 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 1-177
Cow position: chr4:30508182-30508006 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 103, 93

Conread position: 3-173
Cow position: chr4:65842912-65843087 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 38

Conread position: 167-470
Cow position: chr4:158073-158382 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 94

Conread position: 167-470
Cow position: chr4:66179430-66179121 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 96

Conread position: 169-495
Cow position: chr4:39272379-39272044 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 179

Conread position: 172-460
Cow position: chr4:40824681-40824396 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 133

Conread position: 172-481
Cow position: chr4:4176001-4176306 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 128

Conread position: 175-340
Cow position: chr4:21564713-21564877 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 162, 81

Conread position: 175-445
Cow position: chr4:30283230-30283492 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 130, 57

Conread position: 175-461
Cow position: chr4:6214985-6214701 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 153

Conread position: 175-465
Cow position: chr4:62565555-62565845 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 46

Conread position: 175-466
Cow position: chr4:3830049-3830338 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 33

Conread position: 175-468
Cow position: chr4:496375-496092 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 35

Conread position: 175-468
Cow position: chr4:43880676-43880973 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 135, 169

Conread position: 175-468
Cow position: chr4:47764603-47764305 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 135, 169

Conread position: 175-470
Cow position: chr4:602561-602860 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 200
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 135, 172

Conread position: 175-470
Cow position: chr4:5879738-5880032 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 190
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 164, 91

Conread position: 175-470
Cow position: chr4:32211734-32212034 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 123, 103

Conread position: 175-470
Cow position: chr4:65223967-65223667 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 84

Conread position: 175-470
Cow position: chr4:66925572-66925866 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 98, 125

Conread position: 175-483
Cow position: chr4:54157595-54157878 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 74

Conread position: 175-491
Cow position: chr4:101362-101046 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 103

Conread position: 175-491
Cow position: chr4:528560-528880 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 211
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr4:6269061-6268741 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 123, 110

Conread position: 175-491
Cow position: chr4:13547595-13547916 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 170

Conread position: 175-491
Cow position: chr4:16056171-16056488 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr4:18424953-18424638 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 133, 169

Conread position: 175-495
Cow position: chr4:969470-969153 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 17

Conread position: 175-495
Cow position: chr4:1497185-1496867 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 101

Conread position: 177-471
Cow position: chr4:11393767-11393478 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 91, 52

Conread position: 177-489
Cow position: chr4:4905723-4906031 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 130, 111

Conread position: 177-491
Cow position: chr4:30307883-30307572 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 178, 113

Conread position: 197-359
Cow position: chr4:51044302-51044142 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 0

Show alignments to all cow chromosomes.