Cow genome map

Conread name: rhlv16b_j11.y1

Conread position: 1-128
Cow position: chr5:72046580-72046712 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 1-150
Cow position: chr5:45179763-45179917 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 1-154
Cow position: chr5:4015789-4015947 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-154
Cow position: chr5:58199093-58198935 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-163
Cow position: chr5:24159018-24158851 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-163
Cow position: chr5:51746307-51746140 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-164
Cow position: chr5:62436206-62436038 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr5:1338838-1339015 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:2917545-2917371 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 84

Conread position: 1-172
Cow position: chr5:3544391-3544215 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:3789311-3789135 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:6151749-6151925 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:7396331-7396156 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 122

Conread position: 1-172
Cow position: chr5:14636495-14636671 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:19978831-19979007 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:21189304-21189128 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:21827903-21827734 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 68

Conread position: 1-172
Cow position: chr5:23957243-23957419 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr5:24101733-24101557 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:32755361-32755537 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:37735459-37735283 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 0

Conread position: 1-172
Cow position: chr5:46735193-46735369 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 104, 93

Conread position: 1-172
Cow position: chr5:47560478-47560654 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 98, 0

Conread position: 1-172
Cow position: chr5:49117268-49117444 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 1-173
Cow position: chr5:26466721-26466546 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 111, 24

Conread position: 1-173
Cow position: chr5:32964977-32965160 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 122

Conread position: 1-173
Cow position: chr5:45180004-45180182 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-173
Cow position: chr5:69519677-69519507 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 38

Conread position: 1-173
Cow position: chr5:71456963-71457140 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 93

Conread position: 1-175
Cow position: chr5:28571630-28571452 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 11

Conread position: 1-176
Cow position: chr5:443226-443406 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:710068-710248 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:2976869-2976689 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 104, 93

Conread position: 1-176
Cow position: chr5:3970608-3970428 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:5106307-5106128 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 1-176
Cow position: chr5:6125079-6125259 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:6585370-6585550 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:6615210-6615390 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:9003027-9003207 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 86

Conread position: 1-176
Cow position: chr5:14543218-14543397 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 98, 169

Conread position: 1-176
Cow position: chr5:15761287-15761466 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 1-176
Cow position: chr5:18118892-18119072 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:18491489-18491309 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 96, 0

Conread position: 1-176
Cow position: chr5:18667390-18667210 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:19969949-19970129 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:20107944-20108124 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:24577519-24577339 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:31120123-31120303 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 43, 36

Conread position: 1-176
Cow position: chr5:40791919-40791743 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 93, 106

Conread position: 1-176
Cow position: chr5:41228964-41229144 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:41488753-41488573 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:42743875-42743711 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 56, 47

Conread position: 1-176
Cow position: chr5:46667157-46666977 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:46779599-46779419 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:47697123-47697293 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 93, 0

Conread position: 1-176
Cow position: chr5:49221410-49221589 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 98, 142

Conread position: 1-176
Cow position: chr5:51166226-51166406 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:51501967-51501787 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 107, 93

Conread position: 1-176
Cow position: chr5:52823124-52823303 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 131

Conread position: 1-176
Cow position: chr5:53075787-53075966 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 142

Conread position: 1-176
Cow position: chr5:54786025-54786205 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-176
Cow position: chr5:54868112-54867933 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 98, 139

Conread position: 1-176
Cow position: chr5:54927836-54928016 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:54930164-54930344 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:55631147-55630967 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 1-176
Cow position: chr5:59064527-59064347 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 1-176
Cow position: chr5:59146460-59146280 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 1-195
Cow position: chr5:39749938-39750136 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 131

Conread position: 169-459
Cow position: chr5:41933160-41932874 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 189
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 182, 73

Conread position: 172-483
Cow position: chr5:49128900-49129193 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 181, 56

Conread position: 175-376
Cow position: chr5:28570359-28570556 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 175-410
Cow position: chr5:34696246-34696484 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 155

Conread position: 175-454
Cow position: chr5:18665623-18665907 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 184
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 133, 169

Conread position: 175-459
Cow position: chr5:26069052-26068773 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 139, 155

Conread position: 175-465
Cow position: chr5:14346712-14346421 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 20

Conread position: 175-469
Cow position: chr5:58195664-58195962 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 135, 7

Conread position: 175-470
Cow position: chr5:6589360-6589060 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 79, 85

Conread position: 175-470
Cow position: chr5:24576575-24576876 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 85

Conread position: 175-470
Cow position: chr5:57366360-57366063 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 164

Conread position: 175-470
Cow position: chr5:59481916-59482215 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 85

Conread position: 175-470
Cow position: chr5:61020187-61019888 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 152, 76

Conread position: 175-470
Cow position: chr5:61273518-61273226 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 136, 57

Conread position: 175-482
Cow position: chr5:53627097-53626788 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 82, 51

Conread position: 175-483
Cow position: chr5:39872080-39872376 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 31

Conread position: 175-483
Cow position: chr5:58334922-58334621 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 144

Conread position: 175-491
Cow position: chr5:2530932-2531252 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 208
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 135, 169

Conread position: 175-491
Cow position: chr5:4019537-4019217 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 211
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 79, 87

Conread position: 175-491
Cow position: chr5:4088466-4088786 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr5:26079557-26079237 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr5:27909609-27909291 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr5:29042173-29042492 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 209
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 135, 169

Conread position: 175-491
Cow position: chr5:44459144-44459464 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 135, 169

Conread position: 175-491
Cow position: chr5:45182448-45182122 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 135, 169

Conread position: 175-491
Cow position: chr5:48468615-48468298 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 206
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 79, 85

Conread position: 175-491
Cow position: chr5:59060282-59060599 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 206
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 85

Conread position: 175-492
Cow position: chr5:14379824-14380145 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 205
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 135, 169

Conread position: 175-495
Cow position: chr5:41359067-41358757 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 98

Conread position: 177-459
Cow position: chr5:16104102-16103829 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 121, 49

Conread position: 177-470
Cow position: chr5:26769474-26769771 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 135, 167

Conread position: 177-470
Cow position: chr5:29009023-29009316 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 156, 113

Conread position: 177-470
Cow position: chr5:39165134-39164839 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 135, 166

Conread position: 178-470
Cow position: chr5:46663663-46663964 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 194
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 132, 287

Show alignments to all cow chromosomes.