Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 334-582 |
| Cow position: | chr12:45092352-45092595 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 219, 22 |
| Conread position: | 338-586 |
| Cow position: | chr12:7884773-7884521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 156, 31 |
| Conread position: | 339-519 |
| Cow position: | chr12:45820458-45820275 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 147, 137 |
| Conread position: | 339-578 |
| Cow position: | chr12:9143296-9143535 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 157, 43 |
| Conread position: | 339-583 |
| Cow position: | chr12:18518576-18518828 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 340-583 |
| Cow position: | chr12:39486336-39486585 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 105, 14 |
| Conread position: | 341-492 |
| Cow position: | chr12:5905967-5906117 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 341-579 |
| Cow position: | chr12:26217913-26217675 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 341-580 |
| Cow position: | chr12:16670178-16670419 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 341-583 |
| Cow position: | chr12:4768836-4769075 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 341-583 |
| Cow position: | chr12:6687804-6688041 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 226, 26 |
| Conread position: | 341-583 |
| Cow position: | chr12:32169452-32169702 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 166, 7 |
| Conread position: | 341-583 |
| Cow position: | chr12:33851271-33851512 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 142, 71 |
| Conread position: | 341-583 |
| Cow position: | chr12:37008791-37008554 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 341-585 |
| Cow position: | chr12:30590680-30590927 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 341-585 |
| Cow position: | chr12:42181225-42180970 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 341-586 |
| Cow position: | chr12:17881774-17882014 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 342-580 |
| Cow position: | chr12:30210394-30210623 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 342-580 |
| Cow position: | chr12:36544735-36544492 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 346-490 |
| Cow position: | chr12:30819158-30819303 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 346-521 |
| Cow position: | chr12:6485296-6485119 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 346-549 |
| Cow position: | chr12:43942388-43942594 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 346-576 |
| Cow position: | chr12:15122239-15122474 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 346-577 |
| Cow position: | chr12:42879610-42879849 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 21 |
| Conread position: | 346-579 |
| Cow position: | chr12:26777275-26777042 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 346-580 |
| Cow position: | chr12:24116446-24116220 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-583 |
| Cow position: | chr12:18421008-18420765 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 346-584 |
| Cow position: | chr12:17269716-17269959 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 346-586 |
| Cow position: | chr12:3371627-3371389 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 155, 81 |
| Conread position: | 346-586 |
| Cow position: | chr12:5554419-5554178 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 346-586 |
| Cow position: | chr12:6469146-6468915 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 346-586 |
| Cow position: | chr12:15089430-15089675 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 346-586 |
| Cow position: | chr12:17031532-17031768 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 230, 26 |
| Conread position: | 346-586 |
| Cow position: | chr12:17080175-17080425 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 346-586 |
| Cow position: | chr12:17879387-17879146 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 346-586 |
| Cow position: | chr12:18577755-18577986 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 346-586 |
| Cow position: | chr12:19261110-19261354 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 346-586 |
| Cow position: | chr12:25561287-25561525 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 346-586 |
| Cow position: | chr12:25805214-25804986 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 346-586 |
| Cow position: | chr12:37514366-37514122 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 148, 178 |
| Conread position: | 347-521 |
| Cow position: | chr12:19507549-19507727 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 347-586 |
| Cow position: | chr12:11659843-11660086 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 347-586 |
| Cow position: | chr12:30170586-30170811 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 348-507 |
| Cow position: | chr12:23644887-23644727 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 348-580 |
| Cow position: | chr12:48415595-48415367 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 53 |
| Conread position: | 348-583 |
| Cow position: | chr12:6241238-6241480 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 349-583 |
| Cow position: | chr12:26575812-26576048 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 177 |
| Conread position: | 349-583 |
| Cow position: | chr12:33948821-33949056 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 21, 214 |
| Conread position: | 350-586 |
| Cow position: | chr12:5839738-5839502 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 177 |
| Conread position: | 350-586 |
| Cow position: | chr12:24273440-24273213 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 78 |
| Conread position: | 353-492 |
| Cow position: | chr12:15641184-15641046 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 353-586 |
| Cow position: | chr12:17252277-17252044 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 64 |
| Conread position: | 354-583 |
| Cow position: | chr12:7902882-7902649 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 162 |
| Conread position: | 356-586 |
| Cow position: | chr12:38774316-38774086 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 143, 18 |
| Conread position: | 357-583 |
| Cow position: | chr12:40158097-40157872 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 357-586 |
| Cow position: | chr12:24032422-24032647 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 144, 166 |
| Conread position: | 358-583 |
| Cow position: | chr12:30745647-30745872 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 358-583 |
| Cow position: | chr12:37170019-37169793 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 136, 180 |
| Conread position: | 358-586 |
| Cow position: | chr12:12232810-12233040 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 359-471 |
| Cow position: | chr12:3092653-3092540 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 359-586 |
| Cow position: | chr12:22285196-22284963 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 222 |
| Conread position: | 360-520 |
| Cow position: | chr12:46464137-46463976 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 7 |
| Conread position: | 362-586 |
| Cow position: | chr12:18123600-18123825 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 363-503 |
| Cow position: | chr12:19502496-19502356 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 364-586 |
| Cow position: | chr12:16605740-16605510 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 172 |
| Conread position: | 366-586 |
| Cow position: | chr12:36261624-36261853 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 369-579 |
| Cow position: | chr12:24167006-24166797 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 369-586 |
| Cow position: | chr12:45039045-45039266 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 158 |
| Conread position: | 381-586 |
| Cow position: | chr12:2734958-2734752 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 129, 113 |
| Conread position: | 384-581 |
| Cow position: | chr12:24437682-24437478 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 385-583 |
| Cow position: | chr12:23714628-23714828 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 386-583 |
| Cow position: | chr12:14986704-14986903 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 386-586 |
| Cow position: | chr12:48578798-48578994 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 395-583 |
| Cow position: | chr12:31841533-31841726 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 396-586 |
| Cow position: | chr12:29731279-29731470 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 397-586 |
| Cow position: | chr12:2964016-2964205 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 397-586 |
| Cow position: | chr12:29180639-29180833 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 398-581 |
| Cow position: | chr12:1952834-1952651 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 406-580 |
| Cow position: | chr12:4512475-4512298 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 415-580 |
| Cow position: | chr12:38679033-38679201 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 442-586 |
| Cow position: | chr12:8710994-8711141 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.