Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 334-492 |
| Cow position: | chr14:2038707-2038865 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 339-586 |
| Cow position: | chr14:20110626-20110877 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 341-580 |
| Cow position: | chr14:24236918-24236673 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 341-581 |
| Cow position: | chr14:16760493-16760249 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 341-583 |
| Cow position: | chr14:12954292-12954527 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 341-583 |
| Cow position: | chr14:21357651-21357405 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 341-586 |
| Cow position: | chr14:11643163-11643401 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 169, 26 |
| Conread position: | 341-586 |
| Cow position: | chr14:16524567-16524314 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 111, 237 |
| Conread position: | 341-586 |
| Cow position: | chr14:36442926-36443172 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 343-581 |
| Cow position: | chr14:4203005-4203242 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 345-474 |
| Cow position: | chr14:41325357-41325486 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-471 |
| Cow position: | chr14:2345156-2345031 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-492 |
| Cow position: | chr14:19372428-19372282 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-492 |
| Cow position: | chr14:29698269-29698418 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 346-578 |
| Cow position: | chr14:48427160-48426925 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 148, 86 |
| Conread position: | 346-580 |
| Cow position: | chr14:20640540-20640778 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 346-581 |
| Cow position: | chr14:26433153-26433399 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 346-583 |
| Cow position: | chr14:15492683-15492439 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 346-583 |
| Cow position: | chr14:16549917-16550146 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 346-583 |
| Cow position: | chr14:20666931-20667157 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 346-583 |
| Cow position: | chr14:24945402-24945646 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 217 |
| Conread position: | 346-583 |
| Cow position: | chr14:33714590-33714826 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 346-583 |
| Cow position: | chr14:41749673-41749908 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 15 |
| Conread position: | 346-586 |
| Cow position: | chr14:10852119-10851872 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 68 |
| Conread position: | 346-586 |
| Cow position: | chr14:13042843-13042604 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 155, 9 |
| Conread position: | 346-586 |
| Cow position: | chr14:18345644-18345879 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 346-586 |
| Cow position: | chr14:21224727-21224488 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 117 |
| Conread position: | 346-586 |
| Cow position: | chr14:22989121-22988880 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 346-586 |
| Cow position: | chr14:25225818-25225577 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 214 |
| Conread position: | 346-586 |
| Cow position: | chr14:26442253-26442501 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 346-586 |
| Cow position: | chr14:41486173-41486424 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 145, 86 |
| Conread position: | 347-518 |
| Cow position: | chr14:27591868-27592043 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 349-580 |
| Cow position: | chr14:39770148-39770370 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 350-512 |
| Cow position: | chr14:29632801-29632960 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 142, 37 |
| Conread position: | 351-473 |
| Cow position: | chr14:24796349-24796471 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-584 |
| Cow position: | chr14:15997680-15997904 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 351-586 |
| Cow position: | chr14:10078352-10078099 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 352-583 |
| Cow position: | chr14:42154889-42155119 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 352-583 |
| Cow position: | chr14:48838678-48838439 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 352-585 |
| Cow position: | chr14:13846066-13845835 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 149, 17 |
| Conread position: | 354-492 |
| Cow position: | chr14:9308310-9308173 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 354-583 |
| Cow position: | chr14:33791269-33791041 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 147, 73 |
| Conread position: | 355-520 |
| Cow position: | chr14:34096487-34096651 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 77 |
| Conread position: | 355-584 |
| Cow position: | chr14:13731018-13731250 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 355-586 |
| Cow position: | chr14:4848426-4848195 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 139, 12 |
| Conread position: | 356-514 |
| Cow position: | chr14:19359968-19359805 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 357-492 |
| Cow position: | chr14:45577015-45577149 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 357-583 |
| Cow position: | chr14:20826566-20826339 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 357-583 |
| Cow position: | chr14:43868387-43868154 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 137, 96 |
| Conread position: | 357-586 |
| Cow position: | chr14:1715810-1715573 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 359-570 |
| Cow position: | chr14:40191663-40191455 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 359-572 |
| Cow position: | chr14:1646110-1646325 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 72 |
| Conread position: | 359-580 |
| Cow position: | chr14:29734288-29734509 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 179 |
| Conread position: | 359-583 |
| Cow position: | chr14:25903607-25903380 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 362-580 |
| Cow position: | chr14:36254623-36254838 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 363-572 |
| Cow position: | chr14:19487369-19487161 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 370-586 |
| Cow position: | chr14:18302026-18301801 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 187 |
| Conread position: | 371-586 |
| Cow position: | chr14:10706940-10706723 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 378-586 |
| Cow position: | chr14:11577125-11576914 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 116, 83 |
| Conread position: | 378-586 |
| Cow position: | chr14:11729053-11729262 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 116 |
| Conread position: | 378-586 |
| Cow position: | chr14:15469925-15470141 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 379-586 |
| Cow position: | chr14:36775706-36775508 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 401-586 |
| Cow position: | chr14:47224332-47224527 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 404-580 |
| Cow position: | chr14:20736642-20736465 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 147 |
| Conread position: | 409-586 |
| Cow position: | chr14:33618328-33618153 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 416-576 |
| Cow position: | chr14:11280094-11280258 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 420-583 |
| Cow position: | chr14:32784100-32784270 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.