Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 338-586 |
| Cow position: | chr20:7438862-7438617 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 161, 10 |
| Conread position: | 341-505 |
| Cow position: | chr20:39266964-39266803 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 341-582 |
| Cow position: | chr20:12126310-12126065 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 158, 7 |
| Conread position: | 341-583 |
| Cow position: | chr20:6240527-6240283 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 341-583 |
| Cow position: | chr20:7624254-7624022 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 341-584 |
| Cow position: | chr20:14879781-14880024 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 341-586 |
| Cow position: | chr20:14620313-14620066 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 341-586 |
| Cow position: | chr20:33067371-33067119 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 342-579 |
| Cow position: | chr20:14980517-14980274 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 346-477 |
| Cow position: | chr20:1009708-1009579 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 346-507 |
| Cow position: | chr20:22030318-22030478 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 146, 124 |
| Conread position: | 346-519 |
| Cow position: | chr20:22978324-22978499 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 153, 21 |
| Conread position: | 346-547 |
| Cow position: | chr20:20203214-20203415 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 346-548 |
| Cow position: | chr20:32463523-32463323 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 148, 17 |
| Conread position: | 346-575 |
| Cow position: | chr20:5702721-5702951 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 164, 21 |
| Conread position: | 346-577 |
| Cow position: | chr20:40177243-40177475 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 346-579 |
| Cow position: | chr20:25162130-25161898 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 346-583 |
| Cow position: | chr20:12581958-12581719 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 346-583 |
| Cow position: | chr20:14806884-14807120 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 346-583 |
| Cow position: | chr20:28605207-28605443 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 164, 21 |
| Conread position: | 346-583 |
| Cow position: | chr20:38089910-38090153 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 346-583 |
| Cow position: | chr20:42166784-42166552 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 346-585 |
| Cow position: | chr20:28982697-28982938 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 346-586 |
| Cow position: | chr20:398309-398072 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 346-586 |
| Cow position: | chr20:8556272-8556030 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 147, 36 |
| Conread position: | 346-586 |
| Cow position: | chr20:31740223-31739977 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 347-586 |
| Cow position: | chr20:10208804-10209047 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 347-586 |
| Cow position: | chr20:22065068-22065301 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 348-583 |
| Cow position: | chr20:3148684-3148918 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 146, 21 |
| Conread position: | 348-586 |
| Cow position: | chr20:20158132-20158371 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 349-517 |
| Cow position: | chr20:9412487-9412658 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 349-586 |
| Cow position: | chr20:11751653-11751894 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 84 |
| Conread position: | 349-586 |
| Cow position: | chr20:23846666-23846425 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 351-503 |
| Cow position: | chr20:8817488-8817339 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 351-548 |
| Cow position: | chr20:16935308-16935114 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 16 |
| Conread position: | 351-586 |
| Cow position: | chr20:2819546-2819788 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 351-586 |
| Cow position: | chr20:8578250-8578495 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 352-538 |
| Cow position: | chr20:17100365-17100550 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 352-576 |
| Cow position: | chr20:2298785-2298565 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 118 |
| Conread position: | 352-580 |
| Cow position: | chr20:13269624-13269848 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 150, 35 |
| Conread position: | 352-586 |
| Cow position: | chr20:38514782-38515029 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 354-586 |
| Cow position: | chr20:26996535-26996774 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 356-566 |
| Cow position: | chr20:23792612-23792814 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 356-586 |
| Cow position: | chr20:7738226-7737994 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 21, 170 |
| Conread position: | 356-586 |
| Cow position: | chr20:25009625-25009393 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 136, 31 |
| Conread position: | 357-577 |
| Cow position: | chr20:7426190-7425967 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 357-586 |
| Cow position: | chr20:3255046-3255274 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 358-586 |
| Cow position: | chr20:22235313-22235539 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 359-583 |
| Cow position: | chr20:33623543-33623322 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 105 |
| Conread position: | 360-586 |
| Cow position: | chr20:15529870-15530100 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 363-580 |
| Cow position: | chr20:39398495-39398716 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 99, 6 |
| Conread position: | 363-583 |
| Cow position: | chr20:24097014-24097232 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 138, 167 |
| Conread position: | 364-577 |
| Cow position: | chr20:13752237-13752444 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 132 |
| Conread position: | 364-583 |
| Cow position: | chr20:28441341-28441556 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 189, 130 |
| Conread position: | 365-581 |
| Cow position: | chr20:12420603-12420384 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 85 |
| Conread position: | 366-520 |
| Cow position: | chr20:21815577-21815734 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 366-580 |
| Cow position: | chr20:2204669-2204452 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 128, 109 |
| Conread position: | 366-581 |
| Cow position: | chr20:15766127-15766351 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 369-548 |
| Cow position: | chr20:35445084-35444901 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 370-586 |
| Cow position: | chr20:3564180-3564393 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 62 |
| Conread position: | 376-580 |
| Cow position: | chr20:24315007-24314803 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 376-586 |
| Cow position: | chr20:36312482-36312271 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 137, 118 |
| Conread position: | 385-579 |
| Cow position: | chr20:382096-381901 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 385-586 |
| Cow position: | chr20:19636141-19635938 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 140 |
| Conread position: | 389-561 |
| Cow position: | chr20:630564-630738 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 392-580 |
| Cow position: | chr20:26041056-26040863 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 395-572 |
| Cow position: | chr20:20590256-20590078 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 130 |
| Conread position: | 396-583 |
| Cow position: | chr20:13805362-13805553 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 396-586 |
| Cow position: | chr20:24491981-24491787 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 399-583 |
| Cow position: | chr20:27407838-27407658 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 403-586 |
| Cow position: | chr20:4892066-4891878 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 424-586 |
| Cow position: | chr20:22012470-22012629 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 433-586 |
| Cow position: | chr20:38061683-38061533 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.