Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 332-579 |
| Cow position: | chr21:868921-868665 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 339-519 |
| Cow position: | chr21:5392526-5392344 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 339-580 |
| Cow position: | chr21:47465109-47464864 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 339-586 |
| Cow position: | chr21:957684-957930 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 147, 30 |
| Conread position: | 339-586 |
| Cow position: | chr21:41590554-41590305 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 339-586 |
| Cow position: | chr21:41621136-41621389 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 340-578 |
| Cow position: | chr21:11740108-11739866 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 114 |
| Conread position: | 341-493 |
| Cow position: | chr21:13365355-13365506 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 341-536 |
| Cow position: | chr21:297767-297952 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 341-574 |
| Cow position: | chr21:10561569-10561336 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 341-580 |
| Cow position: | chr21:643339-643575 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 153, 28 |
| Conread position: | 341-581 |
| Cow position: | chr21:31691497-31691728 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 341-583 |
| Cow position: | chr21:6051521-6051763 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 146, 25 |
| Conread position: | 341-583 |
| Cow position: | chr21:19868942-19868704 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 341-584 |
| Cow position: | chr21:10004872-10004624 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 341-586 |
| Cow position: | chr21:30222358-30222603 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 341-586 |
| Cow position: | chr21:44214139-44214372 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 342-579 |
| Cow position: | chr21:10264048-10264289 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 345-576 |
| Cow position: | chr21:41287776-41287545 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 346-468 |
| Cow position: | chr21:44515282-44515403 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 346-491 |
| Cow position: | chr21:20183090-20183233 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 346-493 |
| Cow position: | chr21:20260302-20260156 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 346-497 |
| Cow position: | chr21:45262794-45262643 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 346-520 |
| Cow position: | chr21:19360158-19359982 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 346-520 |
| Cow position: | chr21:46264190-46264364 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 155, 21 |
| Conread position: | 346-567 |
| Cow position: | chr21:829193-828968 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 346-577 |
| Cow position: | chr21:22861018-22861244 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 346-580 |
| Cow position: | chr21:7169705-7169942 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 346-580 |
| Cow position: | chr21:12104383-12104608 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 346-580 |
| Cow position: | chr21:30835382-30835621 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 346-583 |
| Cow position: | chr21:42135601-42135361 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 346-584 |
| Cow position: | chr21:27229775-27229545 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 346-586 |
| Cow position: | chr21:71604-71847 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 145, 124 |
| Conread position: | 346-586 |
| Cow position: | chr21:7673139-7673374 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 346-586 |
| Cow position: | chr21:8349347-8349583 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 346-586 |
| Cow position: | chr21:8426465-8426704 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 137, 17 |
| Conread position: | 346-586 |
| Cow position: | chr21:22014205-22014452 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 225 |
| Conread position: | 346-586 |
| Cow position: | chr21:29069310-29069062 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 346-586 |
| Cow position: | chr21:34654094-34654331 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 346-586 |
| Cow position: | chr21:37299477-37299721 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 201 |
| Conread position: | 347-583 |
| Cow position: | chr21:33982786-33982556 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 347-583 |
| Cow position: | chr21:39403506-39403270 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 347-583 |
| Cow position: | chr21:46599379-46599616 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 141 |
| Conread position: | 347-586 |
| Cow position: | chr21:11644950-11644705 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 348-492 |
| Cow position: | chr21:38121120-38121264 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-492 |
| Cow position: | chr21:41046825-41046969 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 348-506 |
| Cow position: | chr21:29485000-29485155 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 348-514 |
| Cow position: | chr21:724865-724695 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 80 |
| Conread position: | 348-579 |
| Cow position: | chr21:19240854-19240624 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 195 |
| Conread position: | 348-583 |
| Cow position: | chr21:28907523-28907291 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 348-583 |
| Cow position: | chr21:30592286-30592056 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 348-586 |
| Cow position: | chr21:742306-742535 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 154, 70 |
| Conread position: | 348-586 |
| Cow position: | chr21:24858334-24858577 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 349-586 |
| Cow position: | chr21:36682344-36682587 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 350-583 |
| Cow position: | chr21:47719278-47719047 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 107 |
| Conread position: | 351-583 |
| Cow position: | chr21:21615806-21616034 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 150, 18 |
| Conread position: | 353-517 |
| Cow position: | chr21:11057853-11057690 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 353-583 |
| Cow position: | chr21:29214136-29213901 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 148, 212 |
| Conread position: | 354-586 |
| Cow position: | chr21:17252954-17252716 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 356-586 |
| Cow position: | chr21:32559336-32559110 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 186, 22 |
| Conread position: | 357-586 |
| Cow position: | chr21:14126310-14126533 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 357-586 |
| Cow position: | chr21:22850950-22851176 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 153, 27 |
| Conread position: | 359-506 |
| Cow position: | chr21:46451922-46451777 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 359-586 |
| Cow position: | chr21:16498550-16498776 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 362-586 |
| Cow position: | chr21:641620-641845 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 165 |
| Conread position: | 362-586 |
| Cow position: | chr21:802284-802062 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 192, 132 |
| Conread position: | 363-586 |
| Cow position: | chr21:6851206-6851426 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 365-582 |
| Cow position: | chr21:39393784-39394006 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 368-583 |
| Cow position: | chr21:24875391-24875610 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 369-477 |
| Cow position: | chr21:7088640-7088748 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 375-506 |
| Cow position: | chr21:33210234-33210364 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 375-586 |
| Cow position: | chr21:16569947-16570150 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 377-549 |
| Cow position: | chr21:30243633-30243461 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 381-586 |
| Cow position: | chr21:40820801-40820590 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 382-586 |
| Cow position: | chr21:11182606-11182810 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 382-586 |
| Cow position: | chr21:25012135-25012339 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 101 |
| Conread position: | 387-586 |
| Cow position: | chr21:8506488-8506286 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 387-586 |
| Cow position: | chr21:8509376-8509174 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 389-586 |
| Cow position: | chr21:30657930-30658122 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 396-586 |
| Cow position: | chr21:20174385-20174573 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 398-586 |
| Cow position: | chr21:13883550-13883738 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 66, 101 |
| Conread position: | 401-586 |
| Cow position: | chr21:27810462-27810653 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 423-583 |
| Cow position: | chr21:44732949-44732785 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 428-586 |
| Cow position: | chr21:18056030-18055868 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.