Cow genome map

Conread name: rhlv23b_j22.y1

Conread position: 334-583
Cow position: chr23:10416475-10416231 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 334-583
Cow position: chr23:18822936-18823181 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 337-577
Cow position: chr23:20093296-20093053 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 84

Conread position: 338-580
Cow position: chr23:29626364-29626620 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 125, 0

Conread position: 340-572
Cow position: chr23:2799531-2799756 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 341-577
Cow position: chr23:13202408-13202180 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 127

Conread position: 341-586
Cow position: chr23:39049483-39049240 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 155, 28

Conread position: 346-492
Cow position: chr23:3830243-3830099 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 346-492
Cow position: chr23:4470544-4470398 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 83

Conread position: 346-506
Cow position: chr23:17404796-17404954 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 346-512
Cow position: chr23:35369088-35368922 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 153, 21

Conread position: 346-536
Cow position: chr23:21764875-21765066 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 18, 115

Conread position: 346-576
Cow position: chr23:2160678-2160452 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 74

Conread position: 346-579
Cow position: chr23:18286149-18286376 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 346-580
Cow position: chr23:26841383-26841616 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 44

Conread position: 346-585
Cow position: chr23:11212463-11212703 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 153, 180

Conread position: 346-586
Cow position: chr23:1883350-1883593 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 181

Conread position: 346-586
Cow position: chr23:2501897-2501657 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 16, 24

Conread position: 346-586
Cow position: chr23:3293649-3293889 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 143

Conread position: 346-586
Cow position: chr23:5426388-5426637 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 0

Conread position: 346-586
Cow position: chr23:5795435-5795676 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 147, 69

Conread position: 346-586
Cow position: chr23:18749108-18748876 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 346-586
Cow position: chr23:20539340-20539579 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 18, 150

Conread position: 346-586
Cow position: chr23:24966507-24966261 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 145, 0

Conread position: 346-586
Cow position: chr23:35938302-35938528 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 346-586
Cow position: chr23:40391432-40391675 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 139, 130

Conread position: 347-583
Cow position: chr23:534186-534423 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 51

Conread position: 347-583
Cow position: chr23:1222281-1222044 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 183

Conread position: 347-585
Cow position: chr23:35965101-35965348 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 347-586
Cow position: chr23:3282165-3281910 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 154, 0

Conread position: 347-586
Cow position: chr23:40995130-40995363 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 154, 84

Conread position: 348-512
Cow position: chr23:348991-348823 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 348-583
Cow position: chr23:22414340-22414112 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 188, 21

Conread position: 348-586
Cow position: chr23:16961255-16961486 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 160, 0

Conread position: 349-520
Cow position: chr23:11315077-11314901 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 349-579
Cow position: chr23:17486866-17486634 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 349-586
Cow position: chr23:1583485-1583717 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 31

Conread position: 349-586
Cow position: chr23:39778361-39778597 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 159, 14

Conread position: 350-586
Cow position: chr23:4646473-4646707 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 151, 17

Conread position: 351-583
Cow position: chr23:7845254-7845485 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 150, 205

Conread position: 352-584
Cow position: chr23:16881201-16880972 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 352-586
Cow position: chr23:12363655-12363419 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 149, 14

Conread position: 352-586
Cow position: chr23:25990475-25990238 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 142, 89

Conread position: 354-586
Cow position: chr23:19872713-19872500 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 356-583
Cow position: chr23:1981693-1981476 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 71, 0

Conread position: 357-586
Cow position: chr23:5881552-5881321 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 358-585
Cow position: chr23:6244625-6244404 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 358-586
Cow position: chr23:5451294-5451522 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 134, 14

Conread position: 358-586
Cow position: chr23:24509661-24509884 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 71

Conread position: 358-586
Cow position: chr23:24685212-24685440 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 50, 62

Conread position: 359-491
Cow position: chr23:29459130-29458998 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 359-586
Cow position: chr23:2282211-2281988 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 73

Conread position: 359-586
Cow position: chr23:6148064-6147853 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 359-586
Cow position: chr23:18902083-18901866 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 360-585
Cow position: chr23:22586850-22587078 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 127, 53

Conread position: 360-586
Cow position: chr23:8698391-8698625 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 131, 15

Conread position: 360-586
Cow position: chr23:10497668-10497896 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 74

Conread position: 362-520
Cow position: chr23:17231121-17231277 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 362-574
Cow position: chr23:2358852-2359064 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 78, 66

Conread position: 363-521
Cow position: chr23:5706966-5707125 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 147, 0

Conread position: 363-586
Cow position: chr23:20615354-20615148 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 364-492
Cow position: chr23:18605433-18605306 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 365-586
Cow position: chr23:7709765-7709982 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 120, 113

Conread position: 367-580
Cow position: chr23:39267760-39267979 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 369-518
Cow position: chr23:5785823-5785975 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 125, 0

Conread position: 369-586
Cow position: chr23:4844585-4844812 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 114

Conread position: 369-586
Cow position: chr23:8063523-8063728 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 372-586
Cow position: chr23:1877914-1877697 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 0

Conread position: 375-575
Cow position: chr23:4501737-4501931 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 377-586
Cow position: chr23:40081500-40081699 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 378-583
Cow position: chr23:1194504-1194298 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 114, 147

Conread position: 378-583
Cow position: chr23:22668517-22668315 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 116, 0

Conread position: 381-586
Cow position: chr23:39330302-39330094 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 192

Conread position: 382-586
Cow position: chr23:5395484-5395283 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 387-586
Cow position: chr23:25968421-25968616 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 391-576
Cow position: chr23:5448125-5447935 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 92, 170

Conread position: 392-586
Cow position: chr23:27848998-27849193 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 102, 166

Conread position: 393-583
Cow position: chr23:7155690-7155504 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 395-580
Cow position: chr23:9131956-9131770 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 147

Conread position: 396-586
Cow position: chr23:24809432-24809237 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 50, 37

Conread position: 397-586
Cow position: chr23:24718795-24718603 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 398-576
Cow position: chr23:36022777-36022602 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 92, 21

Conread position: 409-586
Cow position: chr23:4979263-4979083 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 87, 39

Conread position: 413-586
Cow position: chr23:16664379-16664203 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 415-578
Cow position: chr23:23104462-23104298 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 86, 14

Conread position: 415-580
Cow position: chr23:1510902-1510734 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 421-583
Cow position: chr23:21638407-21638570 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 423-583
Cow position: chr23:20725655-20725494 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 428-583
Cow position: chr23:85131-85285 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 56

Show alignments to all cow chromosomes.