Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 334-586 |
| Cow position: | chr24:20364493-20364243 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 340-586 |
| Cow position: | chr24:230201-230453 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 341-520 |
| Cow position: | chr24:27349253-27349071 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 341-583 |
| Cow position: | chr24:2992951-2992710 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 158, 21 |
| Conread position: | 341-586 |
| Cow position: | chr24:18474802-18474556 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 160, 7 |
| Conread position: | 341-586 |
| Cow position: | chr24:24755370-24755602 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 153 |
| Conread position: | 341-586 |
| Cow position: | chr24:30235794-30236045 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 341-586 |
| Cow position: | chr24:39523520-39523277 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 342-577 |
| Cow position: | chr24:18485069-18484829 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 138, 111 |
| Conread position: | 346-476 |
| Cow position: | chr24:30897607-30897477 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-492 |
| Cow position: | chr24:43967570-43967429 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 346-503 |
| Cow position: | chr24:39791470-39791627 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-505 |
| Cow position: | chr24:27726084-27725924 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 346-519 |
| Cow position: | chr24:23186990-23186811 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 346-520 |
| Cow position: | chr24:6912437-6912258 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-574 |
| Cow position: | chr24:31816507-31816736 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 147, 211 |
| Conread position: | 346-577 |
| Cow position: | chr24:29561645-29561415 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 346-579 |
| Cow position: | chr24:27284751-27284990 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 21 |
| Conread position: | 346-580 |
| Cow position: | chr24:28496654-28496416 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 233 |
| Conread position: | 346-580 |
| Cow position: | chr24:37823459-37823691 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 346-580 |
| Cow position: | chr24:39483408-39483630 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 346-581 |
| Cow position: | chr24:18357124-18356889 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 16, 212 |
| Conread position: | 346-581 |
| Cow position: | chr24:43028399-43028160 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 148, 65 |
| Conread position: | 346-583 |
| Cow position: | chr24:17104641-17104402 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 346-583 |
| Cow position: | chr24:27713476-27713240 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 346-583 |
| Cow position: | chr24:28233974-28234211 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 181, 85 |
| Conread position: | 346-583 |
| Cow position: | chr24:30314099-30313859 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 346-583 |
| Cow position: | chr24:37037828-37038061 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 168 |
| Conread position: | 346-584 |
| Cow position: | chr24:17860330-17860091 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 346-586 |
| Cow position: | chr24:211916-212143 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 346-586 |
| Cow position: | chr24:11887089-11887326 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 346-586 |
| Cow position: | chr24:18442630-18442399 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 346-586 |
| Cow position: | chr24:24491087-24490853 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 346-586 |
| Cow position: | chr24:27608170-27607938 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 346-586 |
| Cow position: | chr24:28303436-28303189 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 158 |
| Conread position: | 346-586 |
| Cow position: | chr24:31812118-31812358 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 169, 159 |
| Conread position: | 346-586 |
| Cow position: | chr24:37975052-37974810 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 148, 179 |
| Conread position: | 346-586 |
| Cow position: | chr24:40301090-40301333 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 347-552 |
| Cow position: | chr24:20874612-20874819 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 144, 106 |
| Conread position: | 347-580 |
| Cow position: | chr24:6131943-6131720 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 347-583 |
| Cow position: | chr24:17311287-17311059 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 144, 75 |
| Conread position: | 347-583 |
| Cow position: | chr24:37650603-37650845 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 347-586 |
| Cow position: | chr24:13352970-13353199 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 348-506 |
| Cow position: | chr24:15246713-15246554 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 348-521 |
| Cow position: | chr24:14457790-14457617 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 348-526 |
| Cow position: | chr24:28042905-28043087 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 348-586 |
| Cow position: | chr24:10499145-10499391 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 97 |
| Conread position: | 349-547 |
| Cow position: | chr24:5754770-5754962 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 349-586 |
| Cow position: | chr24:5141877-5142111 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 152, 18 |
| Conread position: | 349-586 |
| Cow position: | chr24:27844597-27844360 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 157 |
| Conread position: | 351-502 |
| Cow position: | chr24:3430668-3430817 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 355-574 |
| Cow position: | chr24:41916191-41916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 355-580 |
| Cow position: | chr24:5360657-5360878 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 355-586 |
| Cow position: | chr24:42175469-42175698 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 356-579 |
| Cow position: | chr24:43371182-43371409 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 356-586 |
| Cow position: | chr24:28510737-28510964 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 357-586 |
| Cow position: | chr24:35675479-35675704 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 358-520 |
| Cow position: | chr24:42639309-42639149 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 358-583 |
| Cow position: | chr24:1269727-1269947 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 358-586 |
| Cow position: | chr24:15057341-15057557 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 359-583 |
| Cow position: | chr24:6723710-6723923 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 359-586 |
| Cow position: | chr24:33372495-33372719 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 360-516 |
| Cow position: | chr24:28689608-28689770 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 360-552 |
| Cow position: | chr24:31359262-31359457 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 360-580 |
| Cow position: | chr24:25122288-25122504 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 363-580 |
| Cow position: | chr24:21835015-21834796 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 166 |
| Conread position: | 363-583 |
| Cow position: | chr24:18374714-18374934 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 174, 131 |
| Conread position: | 364-586 |
| Cow position: | chr24:22133118-22133339 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 161 |
| Conread position: | 365-586 |
| Cow position: | chr24:29985037-29984817 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 130 |
| Conread position: | 369-580 |
| Cow position: | chr24:37651677-37651888 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 185, 125 |
| Conread position: | 375-586 |
| Cow position: | chr24:42687806-42688014 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 384-583 |
| Cow position: | chr24:7757739-7757939 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 385-583 |
| Cow position: | chr24:29539961-29539760 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 48 |
| Conread position: | 389-580 |
| Cow position: | chr24:3412655-3412848 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 392-586 |
| Cow position: | chr24:13610286-13610474 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 394-586 |
| Cow position: | chr24:18302691-18302888 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 395-586 |
| Cow position: | chr24:6886989-6887179 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 396-586 |
| Cow position: | chr24:36775798-36775598 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 434-583 |
| Cow position: | chr24:24540474-24540322 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 436-586 |
| Cow position: | chr24:21656425-21656583 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.