Cow genome map

Conread name: rhlv23b_j22.y1

Conread position: 339-580
Cow position: chr27:15409026-15409260 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 155, 0

Conread position: 339-580
Cow position: chr27:16705260-16705018 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 39

Conread position: 340-586
Cow position: chr27:17397444-17397692 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 341-572
Cow position: chr27:23890944-23890706 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 150, 34

Conread position: 341-576
Cow position: chr27:19660940-19660697 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 22

Conread position: 341-580
Cow position: chr27:23485218-23484981 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 91

Conread position: 341-585
Cow position: chr27:15865616-15865370 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 185

Conread position: 341-586
Cow position: chr27:12459290-12459047 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 129, 36

Conread position: 341-586
Cow position: chr27:20092824-20093054 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 140

Conread position: 342-583
Cow position: chr27:23994414-23994653 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 145, 25

Conread position: 345-580
Cow position: chr27:29615056-29614807 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 17

Conread position: 346-477
Cow position: chr27:16625899-16625772 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 346-507
Cow position: chr27:4673020-4672854 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 346-566
Cow position: chr27:28478583-28478363 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 171, 148

Conread position: 346-574
Cow position: chr27:19685710-19685939 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 155, 174

Conread position: 346-574
Cow position: chr27:23107900-23108131 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 70

Conread position: 346-574
Cow position: chr27:27694770-27695004 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 24

Conread position: 346-576
Cow position: chr27:435236-435001 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 36

Conread position: 346-580
Cow position: chr27:22035374-22035606 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 176, 0

Conread position: 346-580
Cow position: chr27:26865117-26865343 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 137, 28

Conread position: 346-583
Cow position: chr27:16284478-16284251 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 9

Conread position: 346-583
Cow position: chr27:20897022-20897258 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 126, 85

Conread position: 346-583
Cow position: chr27:22220557-22220312 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 148, 0

Conread position: 346-586
Cow position: chr27:426971-426729 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 145, 21

Conread position: 346-586
Cow position: chr27:590759-591010 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 27

Conread position: 346-586
Cow position: chr27:19509016-19508771 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 153, 0

Conread position: 346-586
Cow position: chr27:22171301-22171061 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 87

Conread position: 346-586
Cow position: chr27:23560029-23560271 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 167, 23

Conread position: 346-586
Cow position: chr27:29164773-29164534 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 155, 86

Conread position: 346-586
Cow position: chr27:31210549-31210309 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 36, 26

Conread position: 347-575
Cow position: chr27:12425289-12425058 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 14

Conread position: 347-586
Cow position: chr27:15668769-15669015 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 147, 0

Conread position: 347-586
Cow position: chr27:26999420-26999664 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 152

Conread position: 347-586
Cow position: chr27:27389018-27389268 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 33

Conread position: 348-583
Cow position: chr27:30407035-30407285 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 87

Conread position: 348-586
Cow position: chr27:20828709-20828945 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 171, 139

Conread position: 350-586
Cow position: chr27:15454207-15453972 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 75

Conread position: 352-586
Cow position: chr27:4944517-4944747 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 166, 0

Conread position: 352-586
Cow position: chr27:27055284-27055055 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 80

Conread position: 353-580
Cow position: chr27:20517654-20517417 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 122, 0

Conread position: 353-586
Cow position: chr27:26617399-26617174 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 354-566
Cow position: chr27:20067979-20068196 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 55

Conread position: 354-580
Cow position: chr27:23452457-23452228 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 67

Conread position: 355-579
Cow position: chr27:16786824-16786597 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 117

Conread position: 355-580
Cow position: chr27:31169117-31169340 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 145, 12

Conread position: 356-506
Cow position: chr27:8405829-8405977 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 356-586
Cow position: chr27:19388012-19387780 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 9, 64

Conread position: 357-583
Cow position: chr27:27632609-27632831 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 152, 94

Conread position: 357-586
Cow position: chr27:14670390-14670621 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 144, 0

Conread position: 357-586
Cow position: chr27:30890281-30890060 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 156, 10

Conread position: 358-583
Cow position: chr27:299390-299612 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 16

Conread position: 359-581
Cow position: chr27:7412383-7412158 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 140, 0

Conread position: 359-582
Cow position: chr27:6319910-6319685 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 5, 168

Conread position: 360-586
Cow position: chr27:21669128-21669353 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 180, 137

Conread position: 360-586
Cow position: chr27:23594312-23594078 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 84

Conread position: 363-506
Cow position: chr27:16589716-16589859 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 122, 115

Conread position: 363-520
Cow position: chr27:30489424-30489584 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 0

Conread position: 363-549
Cow position: chr27:20481379-20481560 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 131, 69

Conread position: 365-586
Cow position: chr27:7343444-7343669 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 99, 123

Conread position: 365-586
Cow position: chr27:15002994-15003220 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 125, 0

Conread position: 366-583
Cow position: chr27:29493914-29494136 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 173

Conread position: 375-520
Cow position: chr27:788823-788970 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 375-583
Cow position: chr27:6106674-6106469 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 117, 53

Conread position: 375-583
Cow position: chr27:7425214-7425426 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 126, 0

Conread position: 376-586
Cow position: chr27:23957489-23957277 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 35

Conread position: 378-586
Cow position: chr27:13204430-13204224 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 55

Conread position: 381-586
Cow position: chr27:24223922-24223714 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 60

Conread position: 382-580
Cow position: chr27:26323415-26323207 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 19

Conread position: 384-586
Cow position: chr27:22547434-22547629 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 385-580
Cow position: chr27:24693377-24693183 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 57

Conread position: 389-586
Cow position: chr27:19576363-19576564 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 105, 0

Conread position: 390-574
Cow position: chr27:26504261-26504075 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 104, 42

Conread position: 395-576
Cow position: chr27:15859343-15859528 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 96, 37

Conread position: 395-586
Cow position: chr27:11134040-11133847 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 41

Conread position: 398-578
Cow position: chr27:27528870-27529047 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 86, 7

Conread position: 399-586
Cow position: chr27:2949377-2949557 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 404-586
Cow position: chr27:20325089-20324898 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 98, 89

Conread position: 416-583
Cow position: chr27:3498484-3498318 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 422-586
Cow position: chr27:31183503-31183329 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 441-583
Cow position: chr27:28062290-28062432 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.