Cow genome map
| Conread name: | rhlv23b_j22.y1 |
| Conread position: | 334-583 |
| Cow position: | chr29:25092052-25092297 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 341-509 |
| Cow position: | chr29:4002838-4003009 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 341-577 |
| Cow position: | chr29:29923626-29923389 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 341-579 |
| Cow position: | chr29:41530797-41531040 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 341-583 |
| Cow position: | chr29:31928935-31929179 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 341-586 |
| Cow position: | chr29:732568-732806 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 341-586 |
| Cow position: | chr29:36952350-36952116 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 144, 100 |
| Conread position: | 346-477 |
| Cow position: | chr29:24578813-24578945 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 346-503 |
| Cow position: | chr29:27329846-27329999 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 346-507 |
| Cow position: | chr29:23220548-23220389 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 346-529 |
| Cow position: | chr29:28840107-28840293 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 346-577 |
| Cow position: | chr29:34359027-34358792 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 346-580 |
| Cow position: | chr29:20770297-20770534 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 346-580 |
| Cow position: | chr29:28197053-28196830 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 346-580 |
| Cow position: | chr29:44139292-44139055 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 147, 107 |
| Conread position: | 346-583 |
| Cow position: | chr29:4480218-4479974 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 346-583 |
| Cow position: | chr29:22162299-22162071 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 346-583 |
| Cow position: | chr29:26778832-26779069 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 346-586 |
| Cow position: | chr29:22167128-22166891 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 346-586 |
| Cow position: | chr29:22613380-22613617 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 346-586 |
| Cow position: | chr29:31943818-31944065 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 347-492 |
| Cow position: | chr29:8926510-8926364 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 347-571 |
| Cow position: | chr29:23825260-23825031 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 347-583 |
| Cow position: | chr29:44991471-44991232 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 69 |
| Conread position: | 347-586 |
| Cow position: | chr29:5063102-5063339 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 28 |
| Conread position: | 347-586 |
| Cow position: | chr29:19949260-19949501 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 348-502 |
| Cow position: | chr29:18012510-18012665 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 348-520 |
| Cow position: | chr29:30918503-30918669 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 349-577 |
| Cow position: | chr29:25737461-25737232 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 349-580 |
| Cow position: | chr29:22029000-22028771 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 349-583 |
| Cow position: | chr29:43099790-43099556 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 349-586 |
| Cow position: | chr29:40117527-40117761 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 350-580 |
| Cow position: | chr29:4070583-4070810 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 69 |
| Conread position: | 351-522 |
| Cow position: | chr29:38978487-38978663 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 351-586 |
| Cow position: | chr29:4874927-4874694 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 118 |
| Conread position: | 351-586 |
| Cow position: | chr29:7624135-7624361 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 134, 98 |
| Conread position: | 353-492 |
| Cow position: | chr29:23155185-23155323 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 353-576 |
| Cow position: | chr29:29769393-29769168 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 353-583 |
| Cow position: | chr29:31651365-31651595 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 151 |
| Conread position: | 354-580 |
| Cow position: | chr29:41112919-41112700 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 354-583 |
| Cow position: | chr29:12680116-12680351 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 354-586 |
| Cow position: | chr29:36530826-36531062 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 355-586 |
| Cow position: | chr29:36357090-36357324 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 356-580 |
| Cow position: | chr29:35501691-35501475 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-583 |
| Cow position: | chr29:28066454-28066673 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 357-584 |
| Cow position: | chr29:30681748-30681509 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 358-576 |
| Cow position: | chr29:29324457-29324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 74 |
| Conread position: | 360-580 |
| Cow position: | chr29:38980108-38979890 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 362-576 |
| Cow position: | chr29:32197664-32197880 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 363-577 |
| Cow position: | chr29:17804502-17804717 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 363-583 |
| Cow position: | chr29:39038301-39038076 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 364-578 |
| Cow position: | chr29:4423471-4423262 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 364-586 |
| Cow position: | chr29:17109929-17110149 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 370-571 |
| Cow position: | chr29:22723576-22723777 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 124, 187 |
| Conread position: | 375-509 |
| Cow position: | chr29:742669-742535 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 375-576 |
| Cow position: | chr29:7290756-7290955 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 119, 150 |
| Conread position: | 375-586 |
| Cow position: | chr29:21666067-21666282 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 377-584 |
| Cow position: | chr29:34773755-34773555 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 141 |
| Conread position: | 379-577 |
| Cow position: | chr29:39111327-39111137 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 380-586 |
| Cow position: | chr29:9378622-9378831 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 381-583 |
| Cow position: | chr29:26540554-26540347 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 381-586 |
| Cow position: | chr29:29308586-29308386 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 382-586 |
| Cow position: | chr29:36781317-36781114 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 384-583 |
| Cow position: | chr29:19363700-19363901 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 385-583 |
| Cow position: | chr29:22729558-22729758 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 34 |
| Conread position: | 387-586 |
| Cow position: | chr29:19125314-19125526 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 405-584 |
| Cow position: | chr29:40351065-40350887 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 416-583 |
| Cow position: | chr29:17282089-17282254 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 438-583 |
| Cow position: | chr29:40112425-40112572 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.