Cow genome map
| Conread name: | rhlv25b_g20.y1 |
| Conread position: | 88-239 |
| Cow position: | chr21:20163992-20163833 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 89-239 |
| Cow position: | chr21:30592029-30592184 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 90-239 |
| Cow position: | chr21:14126554-14126402 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 97-239 |
| Cow position: | chr21:36398290-36398438 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 98-239 |
| Cow position: | chr21:11678047-11678187 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 98-239 |
| Cow position: | chr21:25012354-25012207 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 100-238 |
| Cow position: | chr21:20174588-20174444 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 101-237 |
| Cow position: | chr21:82332-82194 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 101-239 |
| Cow position: | chr21:71860-71712 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 134 |
| Conread position: | 102-239 |
| Cow position: | chr21:42341669-42341813 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 103-227 |
| Cow position: | chr21:35337655-35337786 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 103-239 |
| Cow position: | chr21:8426714-8426571 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 104-239 |
| Cow position: | chr21:8349592-8349453 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 104-239 |
| Cow position: | chr21:24875622-24875478 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 107-239 |
| Cow position: | chr21:40930210-40930350 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 114-238 |
| Cow position: | chr21:7673373-7673246 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 115-239 |
| Cow position: | chr21:44732784-44732919 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 116-220 |
| Cow position: | chr21:674926-674817 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-234 |
| Cow position: | chr21:13883735-13883616 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 116-235 |
| Cow position: | chr21:28907291-28907417 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 116-237 |
| Cow position: | chr21:742532-742404 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-237 |
| Cow position: | chr21:16498773-16498643 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-237 |
| Cow position: | chr21:24598901-24598785 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 116-237 |
| Cow position: | chr21:28030537-28030415 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 116-239 |
| Cow position: | chr21:641842-641712 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:802065-802192 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 116-239 |
| Cow position: | chr21:6851423-6851297 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 116-239 |
| Cow position: | chr21:9315059-9314930 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:12339875-12339748 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:15012689-15012564 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:16119904-16120036 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:21616034-21615907 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:22851173-22851045 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:25014782-25014906 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 116-239 |
| Cow position: | chr21:30368332-30368201 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:30658119-30657995 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 116-239 |
| Cow position: | chr21:31462815-31462687 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:33982556-33982685 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:34654328-34654198 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chr21:41590308-41590440 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 117-233 |
| Cow position: | chr21:14324374-14324491 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 117-239 |
| Cow position: | chr21:643577-643449 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 117-239 |
| Cow position: | chr21:37110924-37110796 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 118-239 |
| Cow position: | chr21:11644710-11644841 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 118-239 |
| Cow position: | chr21:23783592-23783717 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 118-239 |
| Cow position: | chr21:37495688-37495819 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 119-239 |
| Cow position: | chr21:32559116-32559240 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 123-239 |
| Cow position: | chr21:8351043-8351168 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.