Cow genome map
| Conread name: | rhlv25b_g20.y1 |
| Conread position: | 72-237 |
| Cow position: | chrX:27431659-27431828 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 72-239 |
| Cow position: | chrX:34314287-34314112 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 83-239 |
| Cow position: | chrX:23089091-23088940 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 86-239 |
| Cow position: | chrX:9201795-9201636 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 87-239 |
| Cow position: | chrX:17525625-17525779 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 88-239 |
| Cow position: | chrX:4399369-4399207 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 97-239 |
| Cow position: | chrX:42380870-42381024 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 98-234 |
| Cow position: | chrX:38726903-38727046 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 98-239 |
| Cow position: | chrX:32747961-32747820 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 100-239 |
| Cow position: | chrX:35029697-35029838 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 101-233 |
| Cow position: | chrX:42216395-42216537 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 101-237 |
| Cow position: | chrX:5487711-5487849 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 101-237 |
| Cow position: | chrX:11325868-11326007 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 101-237 |
| Cow position: | chrX:45502374-45502236 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 101-237 |
| Cow position: | chrX:46291381-46291235 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 101-238 |
| Cow position: | chrX:39642391-39642533 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 101-239 |
| Cow position: | chrX:12972916-12972771 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 101-239 |
| Cow position: | chrX:13177246-13177388 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 101-239 |
| Cow position: | chrX:19394794-19394641 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 101-239 |
| Cow position: | chrX:20584550-20584416 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 101-239 |
| Cow position: | chrX:27668723-27668870 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 101-239 |
| Cow position: | chrX:41526296-41526441 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 101-239 |
| Cow position: | chrX:42480065-42479921 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 102-237 |
| Cow position: | chrX:34991600-34991454 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 102-238 |
| Cow position: | chrX:34792086-34792223 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 102-239 |
| Cow position: | chrX:16836057-16836201 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 102-239 |
| Cow position: | chrX:31480203-31480056 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 102-239 |
| Cow position: | chrX:43059020-43059163 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 103-238 |
| Cow position: | chrX:14135911-14135767 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 103-239 |
| Cow position: | chrX:16984871-16984729 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 109-239 |
| Cow position: | chrX:34836842-34836976 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 109-239 |
| Cow position: | chrX:41871287-41871155 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 113-238 |
| Cow position: | chrX:12437057-12437183 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 116-233 |
| Cow position: | chrX:28940467-28940339 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-237 |
| Cow position: | chrX:231803-231928 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 116-237 |
| Cow position: | chrX:31279704-31279834 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-238 |
| Cow position: | chrX:3494827-3494958 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 116-238 |
| Cow position: | chrX:4486801-4486935 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 116-238 |
| Cow position: | chrX:21986078-21986202 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 116-238 |
| Cow position: | chrX:22075018-22074889 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 116-238 |
| Cow position: | chrX:41215546-41215411 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:1087925-1088055 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:2936176-2936045 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:4152821-4152943 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 116-239 |
| Cow position: | chrX:4289657-4289532 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 116-239 |
| Cow position: | chrX:6414255-6414129 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 116-239 |
| Cow position: | chrX:6480372-6480508 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:8327128-8326992 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:8869181-8869314 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:11656301-11656169 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:17795202-17795069 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 116-239 |
| Cow position: | chrX:20583883-20583754 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:23136954-23136828 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 116-239 |
| Cow position: | chrX:23358894-23359026 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:23497474-23497603 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 116-239 |
| Cow position: | chrX:27145822-27145692 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:29050465-29050335 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:29681895-29682023 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 116-239 |
| Cow position: | chrX:32867093-32866963 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:33855003-33855131 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 116-239 |
| Cow position: | chrX:35986038-35985906 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 116-239 |
| Cow position: | chrX:37177090-37176962 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 116-239 |
| Cow position: | chrX:38094303-38094432 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:40556240-40556371 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:42927607-42927736 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 116-239 |
| Cow position: | chrX:43028452-43028320 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 116-239 |
| Cow position: | chrX:47855200-47855068 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 117-239 |
| Cow position: | chrX:25420546-25420419 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 118-239 |
| Cow position: | chrX:31436690-31436562 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 123-239 |
| Cow position: | chrX:41192905-41192792 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 124-238 |
| Cow position: | chrX:39419506-39419625 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.