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Cow genome map

           
Conread name:
           
rhyp10c_i19.y1
        

               
Conread position:
               
35-282
               

               
Cow position:
               
chr11:37565135-37564891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
43-362
               

               
Cow position:
               
chr11:42155476-42155169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
215, 37
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr11:41141131-41140919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
57-348
               

               
Cow position:
               
chr11:15772477-15772759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 18
               

               
Conread position:
               
58-210
               

               
Cow position:
               
chr11:18393997-18394144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr11:7247655-7247941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
59-321
               

               
Cow position:
               
chr11:56115181-56114918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
59-346
               

               
Cow position:
               
chr11:7330061-7329789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr11:68554855-68555143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
60-345
               

               
Cow position:
               
chr11:50472559-50472273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
60-352
               

               
Cow position:
               
chr11:25791451-25791745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
61-287
               

               
Cow position:
               
chr11:32800869-32800639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
61-342
               

               
Cow position:
               
chr11:6423162-6423446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
197, 65
               

               
Conread position:
               
62-301
               

               
Cow position:
               
chr11:23220596-23220362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
196, 56
               

               
Conread position:
               
62-346
               

               
Cow position:
               
chr11:27913526-27913239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
65-345
               

               
Cow position:
               
chr11:5329021-5328735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
67-342
               

               
Cow position:
               
chr11:5961535-5961262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
67-346
               

               
Cow position:
               
chr11:18852138-18851863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
68-257
               

               
Cow position:
               
chr11:6784431-6784253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr11:54741852-54742170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
69-316
               

               
Cow position:
               
chr11:87171847-87172092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
70-226
               

               
Cow position:
               
chr11:22102529-22102684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
70-346
               

               
Cow position:
               
chr11:29960518-29960253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
188, 47
               

               
Conread position:
               
71-339
               

               
Cow position:
               
chr11:42835724-42835995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
71-345
               

               
Cow position:
               
chr11:37435759-37436030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
71-349
               

               
Cow position:
               
chr11:6245552-6245270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 78
               

               
Conread position:
               
72-302
               

               
Cow position:
               
chr11:6319903-6320134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
72-332
               

               
Cow position:
               
chr11:19739170-19739427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
72-344
               

               
Cow position:
               
chr11:65826529-65826794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
73-321
               

               
Cow position:
               
chr11:17517629-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
73-342
               

               
Cow position:
               
chr11:19591777-19592034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
185, 26
               

               
Conread position:
               
73-347
               

               
Cow position:
               
chr11:29308807-29308534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
185, 44
               

               
Conread position:
               
74-342
               

               
Cow position:
               
chr11:2874630-2874350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
74-346
               

               
Cow position:
               
chr11:1380904-1380630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
76-305
               

               
Cow position:
               
chr11:42064005-42064229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
183, 11
               

               
Conread position:
               
76-346
               

               
Cow position:
               
chr11:81849108-81848842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
182, 32
               

               
Conread position:
               
77-276
               

               
Cow position:
               
chr11:75915206-75915018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr11:42498063-42497844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
181, 34
               

               
Conread position:
               
77-348
               

               
Cow position:
               
chr11:34616483-34616211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
181, 69
               

               
Conread position:
               
78-286
               

               
Cow position:
               
chr11:46314236-46314025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
78-347
               

               
Cow position:
               
chr11:19487262-19487527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
180, 10
               

               
Conread position:
               
79-304
               

               
Cow position:
               
chr11:79666046-79666265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr11:6107699-6107962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
80-302
               

               
Cow position:
               
chr11:74152528-74152757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
80-325
               

               
Cow position:
               
chr11:4221532-4221294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
80-331
               

               
Cow position:
               
chr11:34121418-34121168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
81-257
               

               
Cow position:
               
chr11:30874499-30874325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-315
               

               
Cow position:
               
chr11:86895587-86895362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
177, 30
               

               
Conread position:
               
81-319
               

               
Cow position:
               
chr11:60516314-60516551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
81-332
               

               
Cow position:
               
chr11:18508810-18509062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
81-349
               

               
Cow position:
               
chr11:55744687-55744419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 65
               

               
Conread position:
               
81-349
               

               
Cow position:
               
chr11:63433846-63434106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
82-289
               

               
Cow position:
               
chr11:1625001-1625212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:9836239-9836457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
83-286
               

               
Cow position:
               
chr11:36847381-36847182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
175, 19
               

               
Conread position:
               
83-295
               

               
Cow position:
               
chr11:18777379-18777593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
83-307
               

               
Cow position:
               
chr11:32653509-32653282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr11:67172490-67172707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
83-315
               

               
Cow position:
               
chr11:65842862-65843088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
83-315
               

               
Cow position:
               
chr11:77017445-77017227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
83-317
               

               
Cow position:
               
chr11:18119713-18119485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
170, 15
               

               
Conread position:
               
83-329
               

               
Cow position:
               
chr11:43914505-43914263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 15
               

               
Conread position:
               
83-331
               

               
Cow position:
               
chr11:33002181-33001934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
83-342
               

               
Cow position:
               
chr11:5602672-5602408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
83-346
               

               
Cow position:
               
chr11:15504326-15504068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
83-346
               

               
Cow position:
               
chr11:32254005-32254262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
83-346
               

               
Cow position:
               
chr11:36182906-36182645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
83-346
               

               
Cow position:
               
chr11:77745036-77745297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
83-347
               

               
Cow position:
               
chr11:4225302-4225051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
83-349
               

               
Cow position:
               
chr11:35580479-35580211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
83-350
               

               
Cow position:
               
chr11:55053078-55052822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 44
               

               
Conread position:
               
84-346
               

               
Cow position:
               
chr11:34896777-34896516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
174, 10
               

               
Conread position:
               
84-346
               

               
Cow position:
               
chr11:53817063-53816812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
85-229
               

               
Cow position:
               
chr11:81043320-81043461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
85-242
               

               
Cow position:
               
chr11:28850464-28850308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
85-255
               

               
Cow position:
               
chr11:32817601-32817770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
85-342
               

               
Cow position:
               
chr11:62964702-62964448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
141, 17
               

               
Conread position:
               
85-343
               

               
Cow position:
               
chr11:3597330-3597075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
173, 14
               

               
Conread position:
               
86-231
               

               
Cow position:
               
chr11:35801727-35801586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
86-313
               

               
Cow position:
               
chr11:35434440-35434676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chr11:48776097-48776346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
86-344
               

               
Cow position:
               
chr11:52690316-52690563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 14
               

               
Conread position:
               
86-346
               

               
Cow position:
               
chr11:85723908-85723652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
87-303
               

               
Cow position:
               
chr11:58472459-58472246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr11:20117287-20117060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
87-339
               

               
Cow position:
               
chr11:46329705-46329456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
171, 10
               

               
Conread position:
               
87-348
               

               
Cow position:
               
chr11:64077290-64077553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
88-231
               

               
Cow position:
               
chr11:49232305-49232162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
88-305
               

               
Cow position:
               
chr11:5486232-5486009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
88-312
               

               
Cow position:
               
chr11:6094193-6094414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
88-345
               

               
Cow position:
               
chr11:40792484-40792751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
88-346
               

               
Cow position:
               
chr11:63519201-63518956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
88-348
               

               
Cow position:
               
chr11:27248699-27248446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
170, 58
               

               
Conread position:
               
88-349
               

               
Cow position:
               
chr11:30708718-30708458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
88-350
               

               
Cow position:
               
chr11:66289764-66289501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
170, 60
               

               
Conread position:
               
88-370
               

               
Cow position:
               
chr11:27565533-27565261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
89-257
               

               
Cow position:
               
chr11:23278945-23279113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
89-273
               

               
Cow position:
               
chr11:64126424-64126238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
89-275
               

               
Cow position:
               
chr11:17552866-17553055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
89-285
               

               
Cow position:
               
chr11:7616995-7617191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
89-289
               

               
Cow position:
               
chr11:7651857-7652055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
169, 21
               

               
Conread position:
               
89-294
               

               
Cow position:
               
chr11:19147933-19148130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
164, 28
               

               
Conread position:
               
89-294
               

               
Cow position:
               
chr11:35924270-35924067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
167, 10
               

               
Conread position:
               
89-299
               

               
Cow position:
               
chr11:41278400-41278187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
89-300
               

               
Cow position:
               
chr11:21590594-21590385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
89-301
               

               
Cow position:
               
chr11:33374176-33373965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
89-302
               

               
Cow position:
               
chr11:36136318-36136108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
89-302
               

               
Cow position:
               
chr11:36361435-36361646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
170, 17
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr11:1932175-1931958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr11:4363708-4363915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
89-306
               

               
Cow position:
               
chr11:81614319-81614519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
89-308
               

               
Cow position:
               
chr11:67572081-67571865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
167, 23
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr11:12080052-12079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
89-315
               

               
Cow position:
               
chr11:49625707-49625931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
89-316
               

               
Cow position:
               
chr11:47314214-47314447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
89-317
               

               
Cow position:
               
chr11:21830001-21830226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
89-318
               

               
Cow position:
               
chr11:12555096-12555323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 9
               

               
Conread position:
               
89-328
               

               
Cow position:
               
chr11:45350298-45350539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
89-334
               

               
Cow position:
               
chr11:8457690-8457936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:15369594-15369346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 20
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:67911952-67912192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
89-343
               

               
Cow position:
               
chr11:63397029-63396776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
89-344
               

               
Cow position:
               
chr11:11125875-11125620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
89-344
               

               
Cow position:
               
chr11:27343482-27343227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
89-345
               

               
Cow position:
               
chr11:71708013-71707772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
89-345
               

               
Cow position:
               
chr11:80893992-80893738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:3404975-3405232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:8670226-8669966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:21508218-21507957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:31417630-31417375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:34646802-34646544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:35444255-35443999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:39462830-39462578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:66572279-66572542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:83032889-83032635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:84385430-84385682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr11:85191410-85191656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
167, 37
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr11:48429326-48429070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
89-348
               

               
Cow position:
               
chr11:6643025-6642766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
89-348
               

               
Cow position:
               
chr11:48672925-48672667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
89-348
               

               
Cow position:
               
chr11:76369323-76369570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr11:2907321-2907571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr11:16315083-16314823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr11:77758552-77758801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
89-351
               

               
Cow position:
               
chr11:5218954-5219209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
90-226
               

               
Cow position:
               
chr11:20823671-20823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
90-276
               

               
Cow position:
               
chr11:62102240-62102423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
90-287
               

               
Cow position:
               
chr11:44614955-44615154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
90-293
               

               
Cow position:
               
chr11:62606625-62606424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
90-301
               

               
Cow position:
               
chr11:36976584-36976373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
90-305
               

               
Cow position:
               
chr11:1076612-1076388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
90-306
               

               
Cow position:
               
chr11:25135069-25135292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
90-307
               

               
Cow position:
               
chr11:36300378-36300584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
168, 8
               

               
Conread position:
               
90-308
               

               
Cow position:
               
chr11:39028-38803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
90-315
               

               
Cow position:
               
chr11:42016431-42016653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 29
               

               
Conread position:
               
90-326
               

               
Cow position:
               
chr11:27972217-27972450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
90-336
               

               
Cow position:
               
chr11:5188142-5187902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
210, 12
               

               
Conread position:
               
90-339
               

               
Cow position:
               
chr11:5433473-5433230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
168, 33
               

               
Conread position:
               
90-342
               

               
Cow position:
               
chr11:24438011-24438266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
196, 29
               

               
Conread position:
               
90-343
               

               
Cow position:
               
chr11:8496240-8495990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
90-344
               

               
Cow position:
               
chr11:78820357-78820111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr11:3740168-3739909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
90-348
               

               
Cow position:
               
chr11:2788602-2788345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
90-348
               

               
Cow position:
               
chr11:5418053-5418308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
168, 36
               

               
Conread position:
               
90-348
               

               
Cow position:
               
chr11:36978015-36977758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
90-354
               

               
Cow position:
               
chr11:22676318-22676062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
90-364
               

               
Cow position:
               
chr11:64103846-64104118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
90-372
               

               
Cow position:
               
chr11:71492656-71492931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
90-373
               

               
Cow position:
               
chr11:77013980-77013712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
91-259
               

               
Cow position:
               
chr11:32586918-32587081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
91-267
               

               
Cow position:
               
chr11:30978176-30978349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
91-280
               

               
Cow position:
               
chr11:71303785-71303599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 32
               

               
Conread position:
               
91-294
               

               
Cow position:
               
chr11:57285501-57285697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
91-305
               

               
Cow position:
               
chr11:1160021-1159808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
91-328
               

               
Cow position:
               
chr11:4395130-4395367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 26
               

               
Conread position:
               
91-331
               

               
Cow position:
               
chr11:40794140-40794382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr11:5792613-5792372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
167, 11
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr11:6395961-6395722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
91-344
               

               
Cow position:
               
chr11:2084349-2084100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
91-344
               

               
Cow position:
               
chr11:80616437-80616200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
91-345
               

               
Cow position:
               
chr11:42067069-42066817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
91-346
               

               
Cow position:
               
chr11:16906821-16907094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
91-346
               

               
Cow position:
               
chr11:27747125-27746879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
168, 34
               

               
Conread position:
               
91-346
               

               
Cow position:
               
chr11:30370310-30370064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
168, 55
               

               
Conread position:
               
91-347
               

               
Cow position:
               
chr11:57874018-57873781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
91-372
               

               
Cow position:
               
chr11:39250172-39249902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
169, 54
               

               
Conread position:
               
92-249
               

               
Cow position:
               
chr11:64607037-64607198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
92-257
               

               
Cow position:
               
chr11:38656979-38657139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
92-264
               

               
Cow position:
               
chr11:24551598-24551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
92-282
               

               
Cow position:
               
chr11:76896164-76896356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
92-290
               

               
Cow position:
               
chr11:38223587-38223777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
166, 33
               

               
Conread position:
               
92-302
               

               
Cow position:
               
chr11:84758033-84757831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr11:36917564-36917784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
92-331
               

               
Cow position:
               
chr11:31024595-31024837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
92-344
               

               
Cow position:
               
chr11:56288749-56288502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
92-344
               

               
Cow position:
               
chr11:70756680-70756439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
92-345
               

               
Cow position:
               
chr11:6857938-6857686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
92-346
               

               
Cow position:
               
chr11:20561784-20562039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
92-346
               

               
Cow position:
               
chr11:69978171-69977925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
92-346
               

               
Cow position:
               
chr11:70422388-70422637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
92-347
               

               
Cow position:
               
chr11:36059005-36058750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
165, 54
               

               
Conread position:
               
92-349
               

               
Cow position:
               
chr11:65058406-65058667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
93-231
               

               
Cow position:
               
chr11:60142887-60143023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
93-289
               

               
Cow position:
               
chr11:81673632-81673437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
93-291
               

               
Cow position:
               
chr11:4411669-4411859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
93-303
               

               
Cow position:
               
chr11:57936993-57937195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
93-305
               

               
Cow position:
               
chr11:17508348-17508559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
93-311
               

               
Cow position:
               
chr11:19549680-19549474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
93-331
               

               
Cow position:
               
chr11:49255615-49255374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr11:70458249-70458007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
165, 24
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr11:25119733-25119976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
165, 24
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr11:41437979-41438232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
167, 53
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr11:53773886-53773637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr11:58594179-58594433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
93-346
               

               
Cow position:
               
chr11:61454295-61454558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
94-239
               

               
Cow position:
               
chr11:21637399-21637538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
94-256
               

               
Cow position:
               
chr11:15744883-15745040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
94-264
               

               
Cow position:
               
chr11:65436426-65436257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
94-271
               

               
Cow position:
               
chr11:17369730-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr11:33369355-33369165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 22
               

               
Conread position:
               
94-295
               

               
Cow position:
               
chr11:35921995-35922193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
164, 25
               

               
Conread position:
               
94-301
               

               
Cow position:
               
chr11:81065850-81066050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr11:67537914-67538122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr11:65939660-65939888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
172, 10
               

               
Conread position:
               
94-321
               

               
Cow position:
               
chr11:10563207-10562988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
94-329
               

               
Cow position:
               
chr11:2900506-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
94-329
               

               
Cow position:
               
chr11:55398950-55399176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
164, 15
               

               
Conread position:
               
94-331
               

               
Cow position:
               
chr11:8437485-8437724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
94-331
               

               
Cow position:
               
chr11:21549689-21549450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 162
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr11:1485655-1485916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
94-343
               

               
Cow position:
               
chr11:35805865-35805616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
94-344
               

               
Cow position:
               
chr11:3715026-3714782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr11:62620579-62620332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:5075026-5075274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:13940390-13940145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:23407660-23407419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:30172503-30172264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:32353784-32354037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:36194499-36194249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:48296227-48295988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
94-346
               

               
Cow position:
               
chr11:67345459-67345699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
94-347
               

               
Cow position:
               
chr11:35562925-35562673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
94-347
               

               
Cow position:
               
chr11:46113052-46113292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr11:26143895-26144142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr11:68883922-68883671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
94-349
               

               
Cow position:
               
chr11:8259283-8259028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
94-349
               

               
Cow position:
               
chr11:13592939-13592687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 15
               

               
Conread position:
               
94-350
               

               
Cow position:
               
chr11:30893491-30893747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
57, 226
               

               
Conread position:
               
94-370
               

               
Cow position:
               
chr11:8988024-8988301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
95-194
               

               
Cow position:
               
chr11:46335055-46334956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
95-254
               

               
Cow position:
               
chr11:30528806-30528646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
95-275
               

               
Cow position:
               
chr11:35794003-35793826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
95-276
               

               
Cow position:
               
chr11:44176800-44176620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr11:25968650-25968852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
95-301
               

               
Cow position:
               
chr11:3728690-3728485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
95-307
               

               
Cow position:
               
chr11:7571826-7571618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
95-319
               

               
Cow position:
               
chr11:66099655-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
95-331
               

               
Cow position:
               
chr11:34968409-34968644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
95-331
               

               
Cow position:
               
chr11:73573850-73573615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
95-345
               

               
Cow position:
               
chr11:63866454-63866703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
95-346
               

               
Cow position:
               
chr11:42884583-42884831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
163, 31
               

               
Conread position:
               
95-347
               

               
Cow position:
               
chr11:17889523-17889777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
95-347
               

               
Cow position:
               
chr11:41133879-41134112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr11:33286753-33287005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr11:40395640-40395391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
95-349
               

               
Cow position:
               
chr11:32710720-32710465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
95-355
               

               
Cow position:
               
chr11:13500214-13499962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 50
               

               
Conread position:
               
96-293
               

               
Cow position:
               
chr11:40011985-40012182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr11:3715439-3715188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr11:53778821-53778568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
97-231
               

               
Cow position:
               
chr11:68909333-68909465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
97-272
               

               
Cow position:
               
chr11:44859082-44859258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
97-275
               

               
Cow position:
               
chr11:54128297-54128119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
97-282
               

               
Cow position:
               
chr11:5559484-5559300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
97-303
               

               
Cow position:
               
chr11:15881221-15881424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
97-305
               

               
Cow position:
               
chr11:33368271-33368078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
97-308
               

               
Cow position:
               
chr11:58048533-58048324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
161, 48
               

               
Conread position:
               
97-345
               

               
Cow position:
               
chr11:37424948-37425186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
97-361
               

               
Cow position:
               
chr11:18924951-18924685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
98-222
               

               
Cow position:
               
chr11:71481822-71481946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
98-325
               

               
Cow position:
               
chr11:47784982-47784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr11:28078695-28078460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
98-344
               

               
Cow position:
               
chr11:38236444-38236208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
98-345
               

               
Cow position:
               
chr11:35347552-35347797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr11:81167833-81168072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
98-362
               

               
Cow position:
               
chr11:32054988-32055250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
159, 10
               

               
Conread position:
               
98-370
               

               
Cow position:
               
chr11:26535983-26535702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
140, 21
               

               
Conread position:
               
99-237
               

               
Cow position:
               
chr11:43627870-43628001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
99-272
               

               
Cow position:
               
chr11:44016444-44016272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
99-305
               

               
Cow position:
               
chr11:9279633-9279428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
99-309
               

               
Cow position:
               
chr11:35544288-35544074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
99-315
               

               
Cow position:
               
chr11:25614605-25614828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
99-329
               

               
Cow position:
               
chr11:3920102-3920332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
99-344
               

               
Cow position:
               
chr11:57503680-57503439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
99-345
               

               
Cow position:
               
chr11:75285559-75285810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
99-345
               

               
Cow position:
               
chr11:80412808-80413059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr11:26117541-26117765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr11:37989425-37989665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
159, 24
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr11:62812755-62812995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr11:63998893-63999133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
100-281
               

               
Cow position:
               
chr11:50629467-50629296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
100-301
               

               
Cow position:
               
chr11:81143346-81143541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr11:31413658-31413418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
100-346
               

               
Cow position:
               
chr11:53888449-53888682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
100-348
               

               
Cow position:
               
chr11:43430239-43430501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 8
               

               
Conread position:
               
100-349
               

               
Cow position:
               
chr11:62742448-62742691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
100-355
               

               
Cow position:
               
chr11:689463-689715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
244, 13
               

               
Conread position:
               
101-230
               

               
Cow position:
               
chr11:28092651-28092521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
101-342
               

               
Cow position:
               
chr11:64009929-64009678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr11:20238874-20238633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
101-346
               

               
Cow position:
               
chr11:4662844-4663092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
102-220
               

               
Cow position:
               
chr11:55830032-55830147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
102-247
               

               
Cow position:
               
chr11:79466993-79467135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
102-266
               

               
Cow position:
               
chr11:2830852-2830691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
156, 23
               

               
Conread position:
               
102-274
               

               
Cow position:
               
chr11:11483517-11483338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr11:46010064-46010232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
102-281
               

               
Cow position:
               
chr11:63491214-63491037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr11:35732886-35733070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
102-289
               

               
Cow position:
               
chr11:26442308-26442493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
102-296
               

               
Cow position:
               
chr11:49192260-49192454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
102-297
               

               
Cow position:
               
chr11:34778247-34778440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
102-299
               

               
Cow position:
               
chr11:44620149-44619956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
102-301
               

               
Cow position:
               
chr11:80370309-80370114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
102-302
               

               
Cow position:
               
chr11:30322300-30322494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
156, 9
               

               
Conread position:
               
102-304
               

               
Cow position:
               
chr11:35805107-35804905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
102-305
               

               
Cow position:
               
chr11:57767386-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
102-308
               

               
Cow position:
               
chr11:64781286-64781079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr11:25604151-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr11:48233034-48232815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
102-316
               

               
Cow position:
               
chr11:15366781-15366988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
102-316
               

               
Cow position:
               
chr11:37099978-37100184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
155, 15
               

               
Conread position:
               
102-317
               

               
Cow position:
               
chr11:75246363-75246143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
102-318
               

               
Cow position:
               
chr11:41238993-41239207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
102-324
               

               
Cow position:
               
chr11:54428817-54428596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
102-327
               

               
Cow position:
               
chr11:63165456-63165673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
102-329
               

               
Cow position:
               
chr11:40516918-40517144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
102-334
               

               
Cow position:
               
chr11:3896504-3896732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr11:73796973-73797208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
102-338
               

               
Cow position:
               
chr11:45619546-45619315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
102-339
               

               
Cow position:
               
chr11:5217266-5217506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
102-343
               

               
Cow position:
               
chr11:19594016-19593776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
102-343
               

               
Cow position:
               
chr11:35665362-35665605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr11:78380875-78381104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
102-346
               

               
Cow position:
               
chr11:1067239-1067485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
102-346
               

               
Cow position:
               
chr11:32126810-32126560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
102-346
               

               
Cow position:
               
chr11:59024155-59024405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
102-346
               

               
Cow position:
               
chr11:68913338-68913095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr11:3283242-3282983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr11:10956679-10956919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
102-349
               

               
Cow position:
               
chr11:36914368-36914615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
102-349
               

               
Cow position:
               
chr11:65607491-65607741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
102-349
               

               
Cow position:
               
chr11:67615059-67615295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
156, 9
               

               
Conread position:
               
102-350
               

               
Cow position:
               
chr11:19247009-19247249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
102-350
               

               
Cow position:
               
chr11:81300424-81300671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
156, 44
               

               
Conread position:
               
102-351
               

               
Cow position:
               
chr11:14649113-14649364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
102-361
               

               
Cow position:
               
chr11:62889695-62889955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 42
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr11:54872567-54872745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
103-289
               

               
Cow position:
               
chr11:30485852-30485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
103-301
               

               
Cow position:
               
chr11:10066545-10066348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
103-316
               

               
Cow position:
               
chr11:27502509-27502717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 23
               

               
Conread position:
               
103-331
               

               
Cow position:
               
chr11:9237654-9237877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
103-339
               

               
Cow position:
               
chr11:36521074-36520836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
103-339
               

               
Cow position:
               
chr11:47310791-47311022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
155, 8
               

               
Conread position:
               
103-350
               

               
Cow position:
               
chr11:42786487-42786742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr11:43641583-43641408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
104-285
               

               
Cow position:
               
chr11:30986828-30986654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 13
               

               
Conread position:
               
104-295
               

               
Cow position:
               
chr11:49486983-49486784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
104-348
               

               
Cow position:
               
chr11:19946615-19946387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
105-257
               

               
Cow position:
               
chr11:4390098-4389946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
105-288
               

               
Cow position:
               
chr11:26057454-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
105-291
               

               
Cow position:
               
chr11:74839801-74839620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
105-299
               

               
Cow position:
               
chr11:7427742-7427938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
130, 7
               

               
Conread position:
               
105-305
               

               
Cow position:
               
chr11:1485039-1485231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
105-326
               

               
Cow position:
               
chr11:41215924-41215707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
105-334
               

               
Cow position:
               
chr11:69417595-69417370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 8
               

               
Conread position:
               
105-340
               

               
Cow position:
               
chr11:74427872-74427638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
153, 14
               

               
Conread position:
               
105-343
               

               
Cow position:
               
chr11:5417078-5416842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
105-343
               

               
Cow position:
               
chr11:37804358-37804596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 41
               

               
Conread position:
               
105-345
               

               
Cow position:
               
chr11:42296433-42296664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr11:4207506-4207266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr11:19118788-19119028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 43
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr11:36297483-36297728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr11:50152617-50152859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr11:66041465-66041239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
105-347
               

               
Cow position:
               
chr11:25698091-25698334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
105-349
               

               
Cow position:
               
chr11:953553-953308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr11:258981-259202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr11:64409157-64408945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
106-335
               

               
Cow position:
               
chr11:21886022-21885799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
106-342
               

               
Cow position:
               
chr11:866472-866251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr11:84890535-84890760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr11:6202649-6202395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr11:30808405-30808641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
152, 11
               

               
Conread position:
               
107-300
               

               
Cow position:
               
chr11:47412033-47411840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
107-313
               

               
Cow position:
               
chr11:60296930-60296718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
107-331
               

               
Cow position:
               
chr11:85571615-85571835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
149, 12
               

               
Conread position:
               
107-339
               

               
Cow position:
               
chr11:43360594-43360815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
107-343
               

               
Cow position:
               
chr11:41213243-41213000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
107-344
               

               
Cow position:
               
chr11:47725083-47724861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr11:7924401-7924634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr11:19657025-19657267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr11:46746828-46746586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr11:83043176-83043408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
107-370
               

               
Cow position:
               
chr11:372510-372771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
108-237
               

               
Cow position:
               
chr11:70273651-70273525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
108-246
               

               
Cow position:
               
chr11:33729515-33729646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
108-249
               

               
Cow position:
               
chr11:68592208-68592070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
108-256
               

               
Cow position:
               
chr11:70634884-70634732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
108-257
               

               
Cow position:
               
chr11:26823302-26823154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
108-267
               

               
Cow position:
               
chr11:27413619-27413782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
108-270
               

               
Cow position:
               
chr11:6429563-6429727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
108-271
               

               
Cow position:
               
chr11:33271619-33271460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
108-272
               

               
Cow position:
               
chr11:38643733-38643572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
108-272
               

               
Cow position:
               
chr11:51683406-51683244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
108-286
               

               
Cow position:
               
chr11:15591290-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
108-287
               

               
Cow position:
               
chr11:59471294-59471115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
108-288
               

               
Cow position:
               
chr11:37042165-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
108-299
               

               
Cow position:
               
chr11:70600638-70600827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
108-301
               

               
Cow position:
               
chr11:77227723-77227538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
108-304
               

               
Cow position:
               
chr11:75749655-75749476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-305
               

               
Cow position:
               
chr11:49210627-49210826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
108-307
               

               
Cow position:
               
chr11:15017248-15017050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
108-313
               

               
Cow position:
               
chr11:43627127-43627331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
108-313
               

               
Cow position:
               
chr11:62125675-62125876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-316
               

               
Cow position:
               
chr11:10876472-10876263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr11:42084482-42084692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr11:81041771-81041986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
108-319
               

               
Cow position:
               
chr11:46784654-46784456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
108-323
               

               
Cow position:
               
chr11:25783905-25783690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
108-326
               

               
Cow position:
               
chr11:22874660-22874443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-331
               

               
Cow position:
               
chr11:7458090-7458312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
108-331
               

               
Cow position:
               
chr11:30764682-30764460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
108-331
               

               
Cow position:
               
chr11:67931301-67931515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
108-334
               

               
Cow position:
               
chr11:62789319-62789097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
108-334
               

               
Cow position:
               
chr11:66939399-66939626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
108-335
               

               
Cow position:
               
chr11:32260721-32260500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
108-340
               

               
Cow position:
               
chr11:1980076-1980308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
108-340
               

               
Cow position:
               
chr11:4436523-4436280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
108-340
               

               
Cow position:
               
chr11:63975323-63975090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
108-342
               

               
Cow position:
               
chr11:17831017-17831262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
108-342
               

               
Cow position:
               
chr11:66188131-66188358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
108-343
               

               
Cow position:
               
chr11:20194233-20194468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
108-344
               

               
Cow position:
               
chr11:83042051-83042299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
108-345
               

               
Cow position:
               
chr11:14378631-14378395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-345
               

               
Cow position:
               
chr11:30964535-30964302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
108-345
               

               
Cow position:
               
chr11:75479831-75480064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:9234036-9234272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:30165700-30165465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:30830431-30830659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:31526070-31525830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:36218480-36218246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:36940404-36940641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:37918858-37919091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:49872698-49872930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:55636035-55636271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:56311407-56311641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:62230378-62230135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:62811485-62811252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:66325917-66326155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:81138402-81138165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr11:83398098-83397861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr11:10095533-10095298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr11:27404881-27405116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr11:27461920-27462144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr11:32595649-32595411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr11:20684380-20684620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr11:25620199-25620442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 38
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr11:35564699-35564459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr11:42083643-42083425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr11:52297031-52297266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
108-349
               

               
Cow position:
               
chr11:33348008-33348234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
108-350
               

               
Cow position:
               
chr11:3720445-3720206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
108-350
               

               
Cow position:
               
chr11:55972741-55972982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
108-352
               

               
Cow position:
               
chr11:77238322-77238079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
150, 31
               

               
Conread position:
               
108-355
               

               
Cow position:
               
chr11:18425049-18425296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
109-257
               

               
Cow position:
               
chr11:6258897-6259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
109-260
               

               
Cow position:
               
chr11:69035348-69035200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
109-301
               

               
Cow position:
               
chr11:79548743-79548938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
109-302
               

               
Cow position:
               
chr11:77241890-77241704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
109-314
               

               
Cow position:
               
chr11:49396337-49396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
109-326
               

               
Cow position:
               
chr11:73983802-73984029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
109-338
               

               
Cow position:
               
chr11:9270548-9270762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
109-345
               

               
Cow position:
               
chr11:36112610-36112379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
109-345
               

               
Cow position:
               
chr11:38334709-38334479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr11:30192368-30192130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr11:45276960-45277193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr11:47351523-47351297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr11:48650175-48649927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 16
               

               
Conread position:
               
109-348
               

               
Cow position:
               
chr11:55334110-55333862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
109-348
               

               
Cow position:
               
chr11:68909665-68909893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
147, 8
               

               
Conread position:
               
109-370
               

               
Cow position:
               
chr11:7874329-7874071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
109-406
               

               
Cow position:
               
chr11:71854094-71854384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
243, 37
               

               
Conread position:
               
110-305
               

               
Cow position:
               
chr11:63498942-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr11:3908427-3908660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr11:13067470-13067711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr11:13162534-13162292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr11:48086108-48085873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
110-347
               

               
Cow position:
               
chr11:17493674-17493432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
110-350
               

               
Cow position:
               
chr11:27907958-27907732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
111-256
               

               
Cow position:
               
chr11:53460887-53460742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
111-282
               

               
Cow position:
               
chr11:81175788-81175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
111-283
               

               
Cow position:
               
chr11:32108500-32108671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr11:17309587-17309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
111-302
               

               
Cow position:
               
chr11:68829811-68829618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
111-305
               

               
Cow position:
               
chr11:5264282-5264092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 12
               

               
Conread position:
               
111-344
               

               
Cow position:
               
chr11:11469466-11469691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
111-349
               

               
Cow position:
               
chr11:17859965-17860204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
111-361
               

               
Cow position:
               
chr11:46427219-46427467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
112-221
               

               
Cow position:
               
chr11:56901877-56901987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr11:67208434-67208273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
146, 18
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr11:73638042-73637875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
112-299
               

               
Cow position:
               
chr11:40538734-40538552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
112-317
               

               
Cow position:
               
chr11:73940375-73940578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
112-343
               

               
Cow position:
               
chr11:41985863-41986088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
112-349
               

               
Cow position:
               
chr11:42291652-42291884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
112-356
               

               
Cow position:
               
chr11:32398828-32398583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
113-264
               

               
Cow position:
               
chr11:55124091-55123941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
113-282
               

               
Cow position:
               
chr11:82732966-82733131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
113-283
               

               
Cow position:
               
chr11:63475485-63475655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
113-305
               

               
Cow position:
               
chr11:6581020-6580828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
113-316
               

               
Cow position:
               
chr11:68326676-68326879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
113-325
               

               
Cow position:
               
chr11:79466408-79466187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
113-331
               

               
Cow position:
               
chr11:67614736-67614952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr11:77705937-77705720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr11:71345131-71345366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chr11:35724156-35723926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
113-345
               

               
Cow position:
               
chr11:67600966-67600740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chr11:37778629-37778876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chr11:47638838-47639072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr11:21421752-21421983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
113-347
               

               
Cow position:
               
chr11:32421299-32421537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
113-350
               

               
Cow position:
               
chr11:17321851-17321598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
113-351
               

               
Cow position:
               
chr11:76653207-76652968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
113-356
               

               
Cow position:
               
chr11:72375479-72375739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
113-371
               

               
Cow position:
               
chr11:41549150-41549407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
114-345
               

               
Cow position:
               
chr11:40459290-40459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
114-346
               

               
Cow position:
               
chr11:4732529-4732297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
114-346
               

               
Cow position:
               
chr11:15382306-15382548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
114-350
               

               
Cow position:
               
chr11:68401986-68401751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
115-315
               

               
Cow position:
               
chr11:21124425-21124621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
115-362
               

               
Cow position:
               
chr11:6594045-6594315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
117-246
               

               
Cow position:
               
chr11:43594248-43594373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
117-346
               

               
Cow position:
               
chr11:11994530-11994752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
117-346
               

               
Cow position:
               
chr11:36217518-36217743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
117-349
               

               
Cow position:
               
chr11:31875276-31875043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
118-257
               

               
Cow position:
               
chr11:8474559-8474421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
118-303
               

               
Cow position:
               
chr11:5467262-5467079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
140, 28
               

               
Conread position:
               
118-339
               

               
Cow position:
               
chr11:35980960-35981186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
118-346
               

               
Cow position:
               
chr11:5201462-5201697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
118-366
               

               
Cow position:
               
chr11:78544466-78544219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
137, 28
               

               
Conread position:
               
119-267
               

               
Cow position:
               
chr11:12742313-12742457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
119-274
               

               
Cow position:
               
chr11:63695658-63695819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
119-331
               

               
Cow position:
               
chr11:28675257-28675046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
119-337
               

               
Cow position:
               
chr11:46245679-46245902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:6233697-6233925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:34644838-34644610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:40608412-40608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:48932408-48932632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:65157224-65157454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
119-346
               

               
Cow position:
               
chr11:81763061-81762817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 204
               

               
Conread position:
               
120-344
               

               
Cow position:
               
chr11:48544614-48544390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 5
               

               
Conread position:
               
120-345
               

               
Cow position:
               
chr11:34630270-34630497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
120-346
               

               
Cow position:
               
chr11:24602137-24601919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
121-221
               

               
Cow position:
               
chr11:41295045-41295143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
121-264
               

               
Cow position:
               
chr11:8828188-8828042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
121-276
               

               
Cow position:
               
chr11:56348653-56348806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 25
               

               
Conread position:
               
121-288
               

               
Cow position:
               
chr11:63407872-63407708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
121-298
               

               
Cow position:
               
chr11:5935939-5936113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
121-303
               

               
Cow position:
               
chr11:42065830-42065647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
121-306
               

               
Cow position:
               
chr11:17074050-17074224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
121-307
               

               
Cow position:
               
chr11:15526285-15526107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr11:62004292-62004492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
135, 20
               

               
Conread position:
               
121-326
               

               
Cow position:
               
chr11:32782696-32782909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
121-331
               

               
Cow position:
               
chr11:51293233-51293442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
172, 27
               

               
Conread position:
               
121-332
               

               
Cow position:
               
chr11:31537270-31537471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
121-337
               

               
Cow position:
               
chr11:23271828-23272038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr11:64101951-64101734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr11:2917415-2917630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr11:35351855-35352083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr11:6399886-6400115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr11:30638774-30638995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr11:49153118-49152905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr11:18447323-18447538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr11:46747681-46747907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
121-349
               

               
Cow position:
               
chr11:2327867-2327637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
121-355
               

               
Cow position:
               
chr11:53510317-53510555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 167
               

               
Conread position:
               
121-356
               

               
Cow position:
               
chr11:68112081-68112318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr11:62754120-62754379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
121-377
               

               
Cow position:
               
chr11:48660108-48659860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
122-257
               

               
Cow position:
               
chr11:32584998-32584859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
123-301
               

               
Cow position:
               
chr11:26343278-26343101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
123-305
               

               
Cow position:
               
chr11:2836036-2835854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
123-305
               

               
Cow position:
               
chr11:60720278-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
123-339
               

               
Cow position:
               
chr11:14875592-14875814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
123-349
               

               
Cow position:
               
chr11:35926733-35926953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr11:36920402-36920627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
124-326
               

               
Cow position:
               
chr11:5454519-5454727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr11:32881320-32881115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
124-339
               

               
Cow position:
               
chr11:28367886-28367667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
124-344
               

               
Cow position:
               
chr11:55762032-55761825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
124-346
               

               
Cow position:
               
chr11:30209648-30209865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
124-346
               

               
Cow position:
               
chr11:70483676-70483896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
124-349
               

               
Cow position:
               
chr11:64029092-64029311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
125-281
               

               
Cow position:
               
chr11:69421531-69421693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
125-304
               

               
Cow position:
               
chr11:64022936-64023103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
125-346
               

               
Cow position:
               
chr11:4637001-4637217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
125-348
               

               
Cow position:
               
chr11:13042974-13043193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
125-370
               

               
Cow position:
               
chr11:73353893-73354128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
126-332
               

               
Cow position:
               
chr11:21173264-21173465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
126-344
               

               
Cow position:
               
chr11:29677380-29677159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr11:48474882-48474644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
127-305
               

               
Cow position:
               
chr11:70587884-70587707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
127-315
               

               
Cow position:
               
chr11:20234858-20234670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
127-321
               

               
Cow position:
               
chr11:49207883-49207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
127-323
               

               
Cow position:
               
chr11:68660442-68660633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr11:80564469-80564264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr11:67312957-67312747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr11:82374042-82373833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
179, 19
               

               
Conread position:
               
127-338
               

               
Cow position:
               
chr11:29786321-29786536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
127-344
               

               
Cow position:
               
chr11:82730812-82731041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr11:8544845-8545058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr11:17083141-17083354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr11:43524782-43524563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 19
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr11:53649199-53649420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 19
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr11:63485104-63484901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
131, 21
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr11:75178070-75177849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr11:5231475-5231698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
131, 19
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr11:17036360-17036577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
127-353
               

               
Cow position:
               
chr11:41313490-41313710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 19
               

               
Conread position:
               
127-366
               

               
Cow position:
               
chr11:77546568-77546346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
127-370
               

               
Cow position:
               
chr11:46999158-46998910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
127-376
               

               
Cow position:
               
chr11:51729446-51729212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
128-244
               

               
Cow position:
               
chr11:67417980-67417866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
128-273
               

               
Cow position:
               
chr11:63258026-63258170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 20
               

               
Conread position:
               
128-297
               

               
Cow position:
               
chr11:30600019-30600188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
128-308
               

               
Cow position:
               
chr11:27760689-27760510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
128-319
               

               
Cow position:
               
chr11:35149573-35149380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
75, 18
               

               
Conread position:
               
128-330
               

               
Cow position:
               
chr11:47755209-47755415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr11:6296907-6297110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
128-335
               

               
Cow position:
               
chr11:77319583-77319380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 18
               

               
Conread position:
               
128-343
               

               
Cow position:
               
chr11:34467733-34467529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr11:15287616-15287395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr11:36981736-36981518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr11:45872139-45872355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr11:60301806-60302006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr11:81913552-81913767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
128-350
               

               
Cow position:
               
chr11:8462176-8461954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
128-365
               

               
Cow position:
               
chr11:39554018-39554264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
128-386
               

               
Cow position:
               
chr11:35109369-35109622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
129-246
               

               
Cow position:
               
chr11:14447681-14447565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
129-257
               

               
Cow position:
               
chr11:899606-899478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
129-289
               

               
Cow position:
               
chr11:922702-922540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chr11:21843969-21844176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chr11:47837489-47837276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
130-331
               

               
Cow position:
               
chr11:32777843-32777649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr11:12076916-12077128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr11:4674275-4674490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
130-346
               

               
Cow position:
               
chr11:7560170-7559954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
130-346
               

               
Cow position:
               
chr11:30728570-30728355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
130-346
               

               
Cow position:
               
chr11:39854853-39855058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr11:6633895-6633665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chr11:44017153-44016927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chr11:63435691-63435474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr11:32199112-32198887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
130-354
               

               
Cow position:
               
chr11:34144750-34144968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
130-370
               

               
Cow position:
               
chr11:85703858-85703632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
211, 18
               

               
Conread position:
               
131-289
               

               
Cow position:
               
chr11:35960813-35960970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
131-346
               

               
Cow position:
               
chr11:4199442-4199226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
132-290
               

               
Cow position:
               
chr11:20021998-20021830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
132-327
               

               
Cow position:
               
chr11:60486249-60486446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
132-346
               

               
Cow position:
               
chr11:35669788-35669997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
133-257
               

               
Cow position:
               
chr11:86925797-86925916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
133-342
               

               
Cow position:
               
chr11:81406001-81406203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
134-348
               

               
Cow position:
               
chr11:3780250-3780465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
135-305
               

               
Cow position:
               
chr11:29779767-29779596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
135-308
               

               
Cow position:
               
chr11:36963973-36964148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr11:35791656-35791867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
136-357
               

               
Cow position:
               
chr11:35182824-35183044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
138-316
               

               
Cow position:
               
chr11:35140072-35139892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr11:38670851-38670641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
139-348
               

               
Cow position:
               
chr11:39499515-39499309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
145-312
               

               
Cow position:
               
chr11:63849103-63849271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
145-318
               

               
Cow position:
               
chr11:18791908-18792085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
145-331
               

               
Cow position:
               
chr11:3703107-3702920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 58
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr11:41281201-41281003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr11:82289743-82289537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
145-346
               

               
Cow position:
               
chr11:87155676-87155475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 152
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr11:8683923-8684129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
145-348
               

               
Cow position:
               
chr11:56499993-56499790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
145-348
               

               
Cow position:
               
chr11:59903047-59902842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
145-349
               

               
Cow position:
               
chr11:52464560-52464364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
145-350
               

               
Cow position:
               
chr11:54388058-54387856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
186, 107
               

               
Conread position:
               
145-357
               

               
Cow position:
               
chr11:15062605-15062388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
146-344
               

               
Cow position:
               
chr11:58927727-58927540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
146-348
               

               
Cow position:
               
chr11:63202093-63202296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 196
               

               
Conread position:
               
147-288
               

               
Cow position:
               
chr11:55117599-55117457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
147-302
               

               
Cow position:
               
chr11:76248202-76248048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
147-303
               

               
Cow position:
               
chr11:9176203-9176049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
147-340
               

               
Cow position:
               
chr11:63695370-63695176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr11:34136394-34136201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr11:61203319-61203123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
147-345
               

               
Cow position:
               
chr11:48233360-48233560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
147-346
               

               
Cow position:
               
chr11:22102745-22102945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
111, 191
               

               
Conread position:
               
147-351
               

               
Cow position:
               
chr11:76890200-76889995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
147-353
               

               
Cow position:
               
chr11:4392193-4392407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
147-355
               

               
Cow position:
               
chr11:23385085-23385297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
148-298
               

               
Cow position:
               
chr11:17807809-17807960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
148-334
               

               
Cow position:
               
chr11:31410728-31410911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
148-346
               

               
Cow position:
               
chr11:49934591-49934776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
149-332
               

               
Cow position:
               
chr11:75090066-75090250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
149-343
               

               
Cow position:
               
chr11:19232799-19232994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
109, 189
               

               
Conread position:
               
149-345
               

               
Cow position:
               
chr11:22319398-22319197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
149-346
               

               
Cow position:
               
chr11:68206695-68206889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr11:23586789-23586600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
151-346
               

               
Cow position:
               
chr11:22977728-22977919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
151-346
               

               
Cow position:
               
chr11:84498794-84498995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
152-348
               

               
Cow position:
               
chr11:71868455-71868651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
153-308
               

               
Cow position:
               
chr11:6320223-6320376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
154-286
               

               
Cow position:
               
chr11:37490431-37490562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
154-315
               

               
Cow position:
               
chr11:41983012-41983181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
154-342
               

               
Cow position:
               
chr11:63909509-63909705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
154-343
               

               
Cow position:
               
chr11:53853236-53853046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr11:13040036-13040220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr11:67804891-67804703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
155-363
               

               
Cow position:
               
chr11:84977220-84977420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
158-357
               

               
Cow position:
               
chr11:32436480-32436277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
160-306
               

               
Cow position:
               
chr11:69624431-69624577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
96, 112
               

               
Conread position:
               
161-299
               

               
Cow position:
               
chr11:61178491-61178359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
162-303
               

               
Cow position:
               
chr11:38202109-38201967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
163-331
               

               
Cow position:
               
chr11:51687590-51687761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
163-352
               

               
Cow position:
               
chr11:33414375-33414186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
95, 178
               

               
Conread position:
               
164-350
               

               
Cow position:
               
chr11:37278087-37278273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
165-307
               

               
Cow position:
               
chr11:79869465-79869319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
168-346
               

               
Cow position:
               
chr11:6835667-6835489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
171-346
               

               
Cow position:
               
chr11:83687304-83687479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
172-348
               

               
Cow position:
               
chr11:23232393-23232563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
173-337
               

               
Cow position:
               
chr11:58938618-58938781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
173-347
               

               
Cow position:
               
chr11:76835496-76835671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
175-346
               

               
Cow position:
               
chr11:65852603-65852431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
176-345
               

               
Cow position:
               
chr11:28644213-28644043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
178-303
               

               
Cow position:
               
chr11:65858206-65858080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
178-314
               

               
Cow position:
               
chr11:37335966-37336102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
178-340
               

               
Cow position:
               
chr11:18608115-18608277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
179-349
               

               
Cow position:
               
chr11:64107384-64107562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr11:39118874-39118700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
180-345
               

               
Cow position:
               
chr11:21910505-21910671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
182-347
               

               
Cow position:
               
chr11:64351671-64351837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
182-348
               

               
Cow position:
               
chr11:56575641-56575809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
183-288
               

               
Cow position:
               
chr11:34623289-34623183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
183-290
               

               
Cow position:
               
chr11:78780740-78780848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
183-316
               

               
Cow position:
               
chr11:81605976-81605843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
183-343
               

               
Cow position:
               
chr11:15373958-15373796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
183-344
               

               
Cow position:
               
chr11:70826067-70825905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
183-345
               

               
Cow position:
               
chr11:56290630-56290467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
183-346
               

               
Cow position:
               
chr11:22747211-22747373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
183-346
               

               
Cow position:
               
chr11:30888161-30888328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 115
               

               
Conread position:
               
183-346
               

               
Cow position:
               
chr11:61958624-61958789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
183-346
               

               
Cow position:
               
chr11:66518604-66518446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chr11:36238897-36238734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
183-348
               

               
Cow position:
               
chr11:72333707-72333542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr11:64867901-64868091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 169
               

               
Conread position:
               
184-317
               

               
Cow position:
               
chr11:70517477-70517610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 98
               

               
Conread position:
               
184-333
               

               
Cow position:
               
chr11:62168214-62168363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
184-346
               

               
Cow position:
               
chr11:35573374-35573535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
185-351
               

               
Cow position:
               
chr11:69307630-69307464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 164
               

               
Conread position:
               
186-337
               

               
Cow position:
               
chr11:70745419-70745573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
186-342
               

               
Cow position:
               
chr11:36634926-36635082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
186-346
               

               
Cow position:
               
chr11:3234189-3234030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
186-355
               

               
Cow position:
               
chr11:40573220-40573386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 84
               

               
Conread position:
               
188-342
               

               
Cow position:
               
chr11:2933260-2933103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
188-346
               

               
Cow position:
               
chr11:7590302-7590147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
189-340
               

               
Cow position:
               
chr11:68173645-68173492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
189-345
               

               
Cow position:
               
chr11:77128775-77128616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
189-346
               

               
Cow position:
               
chr11:30925267-30925111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
189-348
               

               
Cow position:
               
chr11:34692968-34692806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
189-369
               

               
Cow position:
               
chr11:83230288-83230470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
190-334
               

               
Cow position:
               
chr11:69415487-69415630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
190-349
               

               
Cow position:
               
chr11:61137063-61137223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
191-345
               

               
Cow position:
               
chr11:71341356-71341509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
191-346
               

               
Cow position:
               
chr11:36658713-36658864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
191-371
               

               
Cow position:
               
chr11:33697745-33697571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
192-338
               

               
Cow position:
               
chr11:29946803-29946951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
192-352
               

               
Cow position:
               
chr11:4652863-4653022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 150
               

               
Conread position:
               
194-348
               

               
Cow position:
               
chr11:20602334-20602177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
194-354
               

               
Cow position:
               
chr11:63482321-63482479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
194-356
               

               
Cow position:
               
chr11:71501024-71501186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
195-342
               

               
Cow position:
               
chr11:62155745-62155597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
195-345
               

               
Cow position:
               
chr11:56654662-56654511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
196-350
               

               
Cow position:
               
chr11:7307738-7307581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
197-345
               

               
Cow position:
               
chr11:36799203-36799351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
200-346
               

               
Cow position:
               
chr11:77556198-77556051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
200-349
               

               
Cow position:
               
chr11:1157747-1157596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
202-345
               

               
Cow position:
               
chr11:71009224-71009088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
202-348
               

               
Cow position:
               
chr11:42359219-42359067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
203-347
               

               
Cow position:
               
chr11:80761279-80761423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
204-331
               

               
Cow position:
               
chr11:16719343-16719215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
207-348
               

               
Cow position:
               
chr11:56734724-56734583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
209-346
               

               
Cow position:
               
chr11:64638433-64638570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
213-349
               

               
Cow position:
               
chr11:33527141-33527003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
213-367
               

               
Cow position:
               
chr11:16320372-16320220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
214-341
               

               
Cow position:
               
chr11:57331888-57331761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
214-345
               

               
Cow position:
               
chr11:46953035-46952903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
215-348
               

               
Cow position:
               
chr11:7414789-7414919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
218-346
               

               
Cow position:
               
chr11:34106586-34106715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
218-370
               

               
Cow position:
               
chr11:21438292-21438141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
220-346
               

               
Cow position:
               
chr11:52983757-52983630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
225-349
               

               
Cow position:
               
chr11:41175871-41175997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
226-345
               

               
Cow position:
               
chr11:71482455-71482336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
235-348
               

               
Cow position:
               
chr11:70273373-70273259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
237-364
               

               
Cow position:
               
chr11:65624729-65624858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 61
               
Show alignments to all cow chromosomes.