Cow genome map
| Conread name: | rhyp12c_f18.y1 |
| Conread position: | 280-499 |
| Cow position: | chr12:7902620-7902855 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 283-408 |
| Cow position: | chr12:44892393-44892262 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 283-410 |
| Cow position: | chr12:38196368-38196243 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 285-499 |
| Cow position: | chr12:41084228-41084006 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 286-499 |
| Cow position: | chr12:24032671-24032446 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 287-409 |
| Cow position: | chr12:44211334-44211207 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 5 |
| Conread position: | 287-417 |
| Cow position: | chr12:35469270-35469402 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 287-499 |
| Cow position: | chr12:16670446-16670217 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 288-406 |
| Cow position: | chr12:9130082-9129966 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 288-498 |
| Cow position: | chr12:25561545-25561321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 288-499 |
| Cow position: | chr12:30170832-30170619 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 289-406 |
| Cow position: | chr12:13911395-13911515 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 289-410 |
| Cow position: | chr12:3775643-3775526 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 289-418 |
| Cow position: | chr12:41684682-41684551 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 289-425 |
| Cow position: | chr12:17254320-17254183 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 129 |
| Conread position: | 289-431 |
| Cow position: | chr12:403678-403827 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 289-478 |
| Cow position: | chr12:5863657-5863466 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 289-499 |
| Cow position: | chr12:7884502-7884731 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 289-499 |
| Cow position: | chr12:40881745-40881960 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 147 |
| Conread position: | 290-413 |
| Cow position: | chr12:2704739-2704865 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 290-499 |
| Cow position: | chr12:33851537-33851311 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 186 |
| Conread position: | 291-383 |
| Cow position: | chr12:34473432-34473524 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-407 |
| Cow position: | chr12:7110383-7110266 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 292-410 |
| Cow position: | chr12:20637363-20637483 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 292-416 |
| Cow position: | chr12:42951516-42951642 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 292-422 |
| Cow position: | chr12:13995619-13995758 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 292-498 |
| Cow position: | chr12:45126685-45126902 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 90 |
| Conread position: | 292-499 |
| Cow position: | chr12:1333392-1333181 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 90 |
| Conread position: | 292-499 |
| Cow position: | chr12:5554162-5554384 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 292-499 |
| Cow position: | chr12:9143561-9143337 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 293-407 |
| Cow position: | chr12:6958393-6958277 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 293-410 |
| Cow position: | chr12:20572229-20572344 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 293-410 |
| Cow position: | chr12:38679222-38679103 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 293-495 |
| Cow position: | chr12:23714846-23714628 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 293-496 |
| Cow position: | chr12:34465844-34466051 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 293-499 |
| Cow position: | chr12:17252029-17252248 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 76 |
| Conread position: | 293-499 |
| Cow position: | chr12:18123840-18123619 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 293-499 |
| Cow position: | chr12:37169775-37169996 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 294-499 |
| Cow position: | chr12:30745889-30745671 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 99, 187 |
| Conread position: | 295-407 |
| Cow position: | chr12:12233053-12232938 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 295-410 |
| Cow position: | chr12:33129426-33129308 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 295-417 |
| Cow position: | chr12:32808444-32808568 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 295-450 |
| Cow position: | chr12:29131761-29131609 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 295-499 |
| Cow position: | chr12:34161575-34161364 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 296-380 |
| Cow position: | chr12:2835576-2835492 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 74 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-410 |
| Cow position: | chr12:10611829-10611710 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 296-499 |
| Cow position: | chr12:24273201-24273409 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 99, 114 |
| Conread position: | 297-409 |
| Cow position: | chr12:3579654-3579539 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 297-410 |
| Cow position: | chr12:38165371-38165487 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 297-413 |
| Cow position: | chr12:18551300-18551186 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 297-499 |
| Cow position: | chr12:9229346-9229550 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 297-499 |
| Cow position: | chr12:38774075-38774293 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 185 |
| Conread position: | 298-499 |
| Cow position: | chr12:5714787-5714580 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 82, 116 |
| Conread position: | 299-410 |
| Cow position: | chr12:1952637-1952748 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 299-499 |
| Cow position: | chr12:18518840-18518623 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 300-410 |
| Cow position: | chr12:17108321-17108211 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-499 |
| Cow position: | chr12:20776762-20776971 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 300-499 |
| Cow position: | chr12:30210637-30210433 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 301-410 |
| Cow position: | chr12:40157862-40157971 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 301-499 |
| Cow position: | chr12:37008544-37008753 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 151 |
| Conread position: | 302-499 |
| Cow position: | chr12:36544480-36544693 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 303-493 |
| Cow position: | chr12:6468910-6469104 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 303-499 |
| Cow position: | chr12:4769083-4768876 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 91 |
| Conread position: | 304-441 |
| Cow position: | chr12:6688048-6687904 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 306-404 |
| Cow position: | chr12:11090605-11090506 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 306-490 |
| Cow position: | chr12:29731472-29731273 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 306-499 |
| Cow position: | chr12:2734750-2734958 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 306-499 |
| Cow position: | chr12:39465726-39465529 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 104 |
| Conread position: | 306-499 |
| Cow position: | chr12:45092601-45092396 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 307-473 |
| Cow position: | chr12:4512291-4512474 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 307-499 |
| Cow position: | chr12:18577987-18577789 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 105 |
| Conread position: | 308-499 |
| Cow position: | chr12:26576051-26575846 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 146 |
| Conread position: | 309-482 |
| Cow position: | chr12:6465366-6465543 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 310-499 |
| Cow position: | chr12:33949057-33948854 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 312-499 |
| Cow position: | chr12:24116218-24116412 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 103 |
Show alignments to all cow chromosomes.