Cow genome map

Conread name: rhyp12c_f18.y1

Conread position: 261-499
Cow position: chr14:23424063-23424313 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 129

Conread position: 261-499
Cow position: chr14:23442822-23443074 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 131

Conread position: 269-499
Cow position: chr14:40208712-40208952 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 5

Conread position: 282-406
Cow position: chr14:8541388-8541265 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 282-496
Cow position: chr14:49487783-49488010 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 91, 75

Conread position: 284-499
Cow position: chr14:16524289-16524527 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 46

Conread position: 285-379
Cow position: chr14:11750270-11750176 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 286-404
Cow position: chr14:12033422-12033301 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 286-410
Cow position: chr14:36151147-36151275 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 286-499
Cow position: chr14:33714851-33714624 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 287-406
Cow position: chr14:49940837-49940957 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 287-416
Cow position: chr14:26115881-26116020 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 287-499
Cow position: chr14:13845818-13846039 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 98, 43

Conread position: 287-499
Cow position: chr14:39037063-39037275 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 90, 135

Conread position: 288-408
Cow position: chr14:24757643-24757763 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 23

Conread position: 288-439
Cow position: chr14:13809778-13809931 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 288-495
Cow position: chr14:47170527-47170304 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 203

Conread position: 289-405
Cow position: chr14:11831975-11831859 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 85

Conread position: 289-406
Cow position: chr14:5044501-5044617 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 43

Conread position: 289-408
Cow position: chr14:30024849-30024967 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 50

Conread position: 289-410
Cow position: chr14:7636674-7636549 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 23, 72

Conread position: 289-417
Cow position: chr14:23104170-23104039 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 289-427
Cow position: chr14:15781988-15781850 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 112

Conread position: 289-445
Cow position: chr14:41267897-41267734 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 289-496
Cow position: chr14:23682093-23682315 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 289-498
Cow position: chr14:41838032-41837819 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 95, 22

Conread position: 289-499
Cow position: chr14:13731271-13731044 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 123, 0

Conread position: 289-499
Cow position: chr14:20110896-20110668 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 289-499
Cow position: chr14:20826317-20826544 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 289-499
Cow position: chr14:24416717-24416936 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 25, 74

Conread position: 290-499
Cow position: chr14:20640802-20640576 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 89, 0

Conread position: 291-417
Cow position: chr14:27364405-27364539 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 292-398
Cow position: chr14:5639575-5639469 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 292-405
Cow position: chr14:2852979-2853095 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 292-405
Cow position: chr14:50683202-50683088 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 91, 37

Conread position: 292-409
Cow position: chr14:20736443-20736560 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 56

Conread position: 292-417
Cow position: chr14:18559228-18559102 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 118, 0

Conread position: 292-417
Cow position: chr14:35421258-35421124 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 292-417
Cow position: chr14:37152106-37151982 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 292-493
Cow position: chr14:13042588-13042803 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 171

Conread position: 292-496
Cow position: chr14:42155138-42154921 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 120, 109

Conread position: 292-499
Cow position: chr14:10706707-10706929 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 111

Conread position: 293-405
Cow position: chr14:12244552-12244440 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 293-495
Cow position: chr14:41210693-41210905 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 293-499
Cow position: chr14:11576899-11577122 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 77, 0

Conread position: 293-499
Cow position: chr14:16256604-16256820 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 101, 117

Conread position: 293-499
Cow position: chr14:21357387-21357609 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 87, 171

Conread position: 294-404
Cow position: chr14:38411135-38411246 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 294-415
Cow position: chr14:25986343-25986472 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 294-495
Cow position: chr14:15997921-15997715 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 23, 118

Conread position: 294-499
Cow position: chr14:16550163-16549949 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 43

Conread position: 294-499
Cow position: chr14:50589559-50589346 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 123, 39

Conread position: 295-499
Cow position: chr14:37422941-37422736 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 115, 81

Conread position: 296-410
Cow position: chr14:32784285-32784165 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 296-499
Cow position: chr14:41749923-41749706 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 119, 207

Conread position: 297-410
Cow position: chr14:10721868-10721756 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 297-499
Cow position: chr14:12954541-12954331 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 112, 74

Conread position: 297-499
Cow position: chr14:44084642-44084435 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 298-441
Cow position: chr14:2712171-2712029 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 87, 40

Conread position: 298-457
Cow position: chr14:9030121-9030290 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 298-484
Cow position: chr14:8707391-8707588 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 111, 98

Conread position: 299-499
Cow position: chr14:8786701-8786496 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 121

Conread position: 300-417
Cow position: chr14:27847193-27847310 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 106, 35

Conread position: 300-437
Cow position: chr14:14710392-14710247 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 300-498
Cow position: chr14:21224480-21224691 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 301-410
Cow position: chr14:8688677-8688569 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 301-441
Cow position: chr14:46114301-46114160 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 302-402
Cow position: chr14:33462046-33462145 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 302-441
Cow position: chr14:24845818-24845960 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 44

Conread position: 302-497
Cow position: chr14:36775502-36775701 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 79, 151

Conread position: 302-499
Cow position: chr14:19827633-19827426 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 90, 38

Conread position: 303-496
Cow position: chr14:33774184-33774000 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 107, 48

Conread position: 303-499
Cow position: chr14:27733448-27733656 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 304-410
Cow position: chr14:22988876-22988984 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 304-411
Cow position: chr14:39795463-39795570 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 304-499
Cow position: chr14:33791034-33791242 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 81, 158

Conread position: 305-405
Cow position: chr14:39434412-39434312 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 305-410
Cow position: chr14:11643404-11643299 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-482
Cow position: chr14:35651937-35651748 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 307-445
Cow position: chr14:12081282-12081136 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 307-499
Cow position: chr14:2038942-2038754 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 136, 24

Conread position: 307-499
Cow position: chr14:40754400-40754193 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 308-495
Cow position: chr14:48426917-48427121 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 0

Conread position: 309-485
Cow position: chr14:13928428-13928609 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 75

Conread position: 310-460
Cow position: chr14:12505771-12505622 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 133, 52

Conread position: 311-499
Cow position: chr14:606802-606612 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 60, 122

Conread position: 311-499
Cow position: chr14:23080906-23080713 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 103

Conread position: 318-410
Cow position: chr14:11280258-11280163 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 85
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 324-499
Cow position: chr14:40191455-40191639 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.