Cow genome map

Conread name: rhyp12c_f18.y1

Conread position: 282-482
Cow position: chr23:5237214-5237412 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 159, 29

Conread position: 284-410
Cow position: chr23:15056352-15056477 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 285-499
Cow position: chr23:5881300-5881527 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 125, 24

Conread position: 286-410
Cow position: chr23:4338125-4338250 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 286-423
Cow position: chr23:9226497-9226358 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 21, 80

Conread position: 287-495
Cow position: chr23:1337087-1337309 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 29

Conread position: 287-499
Cow position: chr23:12363394-12363627 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 287-499
Cow position: chr23:40995386-40995164 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 58

Conread position: 288-410
Cow position: chr23:3214458-3214586 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 288-410
Cow position: chr23:18204622-18204501 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 95, 21

Conread position: 288-494
Cow position: chr23:27849213-27848992 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 99, 49

Conread position: 288-496
Cow position: chr23:24685460-24685237 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 119, 0

Conread position: 288-498
Cow position: chr23:534446-534222 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 91, 210

Conread position: 288-499
Cow position: chr23:1438498-1438283 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 52, 123

Conread position: 288-499
Cow position: chr23:16961506-16961288 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 89, 126

Conread position: 289-398
Cow position: chr23:18354894-18354785 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 289-410
Cow position: chr23:308399-308520 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 48

Conread position: 289-410
Cow position: chr23:1510709-1510832 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 289-410
Cow position: chr23:4646726-4646605 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 289-410
Cow position: chr23:16447476-16447594 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 289-487
Cow position: chr23:7155482-7155690 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 91, 0

Conread position: 289-499
Cow position: chr23:5426655-5426424 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 98, 22

Conread position: 289-499
Cow position: chr23:11212729-11212498 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 289-499
Cow position: chr23:18901847-18902061 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 91, 125

Conread position: 290-483
Cow position: chr23:24718585-24718795 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 291-403
Cow position: chr23:18679364-18679252 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 291-441
Cow position: chr23:18596905-18597067 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 131

Conread position: 291-499
Cow position: chr23:5732754-5732542 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 46

Conread position: 292-408
Cow position: chr23:14524213-14524095 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 292-408
Cow position: chr23:20744366-20744487 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 292-410
Cow position: chr23:1429616-1429731 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 87

Conread position: 292-410
Cow position: chr23:1614440-1614564 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 292-478
Cow position: chr23:17392823-17392634 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 147

Conread position: 292-497
Cow position: chr23:20539595-20539378 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 292-498
Cow position: chr23:18748860-18749072 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 292-499
Cow position: chr23:7709998-7709781 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 125

Conread position: 293-410
Cow position: chr23:24704498-24704385 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 293-499
Cow position: chr23:1194280-1194501 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 293-499
Cow position: chr23:18823199-18822980 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 114, 91

Conread position: 293-499
Cow position: chr23:39778612-39778392 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 114, 42

Conread position: 294-441
Cow position: chr23:26975252-26975413 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 294-445
Cow position: chr23:38732445-38732291 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 294-478
Cow position: chr23:17484643-17484834 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 85, 141

Conread position: 294-499
Cow position: chr23:17597636-17597417 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 117, 43

Conread position: 295-408
Cow position: chr23:1735179-1735066 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-499
Cow position: chr23:23409928-23409724 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 45

Conread position: 296-446
Cow position: chr23:23104278-23104442 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 0

Conread position: 296-495
Cow position: chr23:16744755-16744542 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 296-498
Cow position: chr23:23904134-23904336 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 146, 75

Conread position: 297-402
Cow position: chr23:532900-533007 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 297-410
Cow position: chr23:2511356-2511240 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 101
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 48

Conread position: 297-410
Cow position: chr23:3917659-3917770 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 297-417
Cow position: chr23:40790176-40790057 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 297-499
Cow position: chr23:1883604-1883385 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 115, 0

Conread position: 297-499
Cow position: chr23:22668301-22668514 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 84, 122

Conread position: 298-410
Cow position: chr23:20725481-20725593 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 298-492
Cow position: chr23:6149985-6150177 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 145, 113

Conread position: 298-493
Cow position: chr23:25968626-25968421 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 52, 47

Conread position: 298-499
Cow position: chr23:22414099-22414309 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 63, 166

Conread position: 299-386
Cow position: chr23:5707312-5707225 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 300-410
Cow position: chr23:399331-399436 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 301-451
Cow position: chr23:31753440-31753291 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 142, 55

Conread position: 301-493
Cow position: chr23:4505019-4504827 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 78, 38

Conread position: 302-433
Cow position: chr23:18710266-18710399 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 302-499
Cow position: chr23:1981467-1981668 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 91, 36

Conread position: 302-499
Cow position: chr23:20093036-20093251 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 182

Conread position: 303-412
Cow position: chr23:1490559-1490453 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 74

Conread position: 303-498
Cow position: chr23:19872495-19872685 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 81, 34

Conread position: 303-499
Cow position: chr23:385103-385318 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 303-499
Cow position: chr23:10416222-10416430 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 304-410
Cow position: chr23:5603543-5603651 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 304-417
Cow position: chr23:13137735-13137850 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 304-498
Cow position: chr23:2457635-2457442 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 56

Conread position: 304-498
Cow position: chr23:5395279-5395484 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 115

Conread position: 305-436
Cow position: chr23:1739660-1739519 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 305-499
Cow position: chr23:6147850-6148045 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 138, 84

Conread position: 305-499
Cow position: chr23:24509887-24509685 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 88, 0

Conread position: 306-414
Cow position: chr23:16664202-16664311 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 306-486
Cow position: chr23:10888470-10888278 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 306-499
Cow position: chr23:8063730-8063535 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 92, 105

Conread position: 306-499
Cow position: chr23:20615146-20615336 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 72, 49

Conread position: 306-499
Cow position: chr23:30244727-30244531 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 104, 76

Conread position: 306-499
Cow position: chr23:40081701-40081504 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 74, 109

Conread position: 310-499
Cow position: chr23:5795674-5795470 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 310-499
Cow position: chr23:10497894-10497690 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 310-499
Cow position: chr23:35938526-35938336 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 71, 11

Conread position: 318-497
Cow position: chr23:22587068-22586873 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 323-488
Cow position: chr23:24514047-24513883 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 75, 88

Conread position: 335-495
Cow position: chr23:4501918-4501747 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 339-496
Cow position: chr23:6367766-6367603 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 77, 60

Show alignments to all cow chromosomes.