Cow genome map

Conread name: rhyp12c_f18.y1

Conread position: 275-424
Cow position: chr27:29399336-29399485 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 127, 34

Conread position: 280-495
Cow position: chr27:31210282-31210511 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 99, 31

Conread position: 282-487
Cow position: chr27:13204198-13204415 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 130, 96

Conread position: 282-499
Cow position: chr27:7343695-7343460 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 54

Conread position: 284-415
Cow position: chr27:13181638-13181776 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 56

Conread position: 287-383
Cow position: chr27:23504501-23504405 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 287-410
Cow position: chr27:15669036-15668907 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 287-491
Cow position: chr27:19576585-19576363 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 40, 0

Conread position: 288-406
Cow position: chr27:25000227-25000111 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 288-417
Cow position: chr27:11982908-11982772 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 23

Conread position: 288-498
Cow position: chr27:15315262-15315484 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 118, 52

Conread position: 288-499
Cow position: chr27:23560289-23560063 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 23

Conread position: 289-392
Cow position: chr27:24320808-24320911 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 289-406
Cow position: chr27:15867133-15867250 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 289-411
Cow position: chr27:1193563-1193441 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 289-462
Cow position: chr27:6151054-6151229 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 105, 121

Conread position: 289-485
Cow position: chr27:11133826-11134040 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 289-494
Cow position: chr27:20888474-20888683 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 122

Conread position: 289-496
Cow position: chr27:16103550-16103772 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 175

Conread position: 289-498
Cow position: chr27:6162663-6162443 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 289-499
Cow position: chr27:17397711-17397486 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 123, 0

Conread position: 289-499
Cow position: chr27:22035631-22035409 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 289-499
Cow position: chr27:31556835-31557045 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 105, 22

Conread position: 290-404
Cow position: chr27:14675431-14675317 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 290-497
Cow position: chr27:14343694-14343489 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 96, 56

Conread position: 291-499
Cow position: chr27:15453955-15454176 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 87, 49

Conread position: 292-410
Cow position: chr27:24952209-24952090 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 51

Conread position: 292-478
Cow position: chr27:16047744-16047551 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 292-493
Cow position: chr27:16284232-16284437 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 77

Conread position: 292-499
Cow position: chr27:4944763-4944546 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 0

Conread position: 292-499
Cow position: chr27:19387764-19387986 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 47

Conread position: 292-499
Cow position: chr27:22220293-22220522 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 293-386
Cow position: chr27:18767338-18767245 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-410
Cow position: chr27:27450139-27450021 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 293-479
Cow position: chr27:10394714-10394900 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 150, 94

Conread position: 293-495
Cow position: chr27:20897276-20897061 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 87, 169

Conread position: 293-499
Cow position: chr27:20093069-20092866 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 150, 89

Conread position: 294-408
Cow position: chr27:23527754-23527639 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 294-409
Cow position: chr27:28192867-28192752 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 49, 31

Conread position: 294-499
Cow position: chr27:18435385-18435165 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 116, 0

Conread position: 294-499
Cow position: chr27:24223700-24223922 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 83, 43

Conread position: 294-499
Cow position: chr27:26617160-26617374 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 44

Conread position: 294-499
Cow position: chr27:30890046-30890259 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 87, 122

Conread position: 295-383
Cow position: chr27:7212984-7212896 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 295-411
Cow position: chr27:12284740-12284862 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 295-414
Cow position: chr27:26315394-26315273 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 295-437
Cow position: chr27:21448076-21447926 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 91, 124

Conread position: 295-499
Cow position: chr27:29504884-29504681 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 148, 79

Conread position: 296-410
Cow position: chr27:22150946-22150830 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 296-410
Cow position: chr27:29614789-29614906 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 296-499
Cow position: chr27:20828957-20828742 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 41

Conread position: 297-499
Cow position: chr27:7425440-7425220 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 297-499
Cow position: chr27:8353243-8353444 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 93

Conread position: 297-499
Cow position: chr27:15409277-15409068 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 117

Conread position: 298-410
Cow position: chr27:22102892-22102778 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 298-410
Cow position: chr27:30884987-30885102 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 299-445
Cow position: chr27:4411941-4411795 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 83, 91

Conread position: 300-406
Cow position: chr27:31248855-31248749 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 300-410
Cow position: chr27:28062443-28062334 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 300-499
Cow position: chr27:426721-426937 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 300-499
Cow position: chr27:22171053-22171265 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 71

Conread position: 301-382
Cow position: chr27:18749168-18749087 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 73
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 301-499
Cow position: chr27:28206556-28206767 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 86, 179

Conread position: 302-406
Cow position: chr27:26939831-26939937 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 302-472
Cow position: chr27:23918281-23918101 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 302-488
Cow position: chr27:19741638-19741451 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 140, 87

Conread position: 303-456
Cow position: chr27:20283398-20283561 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 98, 71

Conread position: 303-497
Cow position: chr27:7412148-7412359 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 303-499
Cow position: chr27:16705007-16705219 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 304-499
Cow position: chr27:4858863-4858671 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 103, 12

Conread position: 305-406
Cow position: chr27:20048392-20048494 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 305-499
Cow position: chr27:6319679-6319887 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 82, 68

Conread position: 305-499
Cow position: chr27:22225813-22225627 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 138, 68

Conread position: 306-410
Cow position: chr27:178620-178727 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 306-417
Cow position: chr27:16505149-16505037 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 61

Conread position: 306-495
Cow position: chr27:24693175-24693377 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 106, 140

Conread position: 306-499
Cow position: chr27:27055053-27055254 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 80, 113

Conread position: 307-441
Cow position: chr27:22386646-22386782 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 309-493
Cow position: chr27:17102660-17102858 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 310-497
Cow position: chr27:299613-299415 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 54

Conread position: 311-499
Cow position: chr27:27613836-27613651 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 102, 73

Conread position: 313-499
Cow position: chr27:26865344-26865150 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 142

Show alignments to all cow chromosomes.