Cow genome map
| Conread name: | rhyp12c_f18.y1 |
| Conread position: | 257-417 |
| Cow position: | chr29:19420373-19420532 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 262-495 |
| Cow position: | chr29:22729809-22729558 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 269-499 |
| Cow position: | chr29:742436-742663 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 269-499 |
| Cow position: | chr29:31929224-31928975 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 284-446 |
| Cow position: | chr29:9622489-9622651 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 159, 27 |
| Conread position: | 285-398 |
| Cow position: | chr29:29176143-29176258 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 286-445 |
| Cow position: | chr29:6337868-6337705 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 287-408 |
| Cow position: | chr29:25981786-25981911 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 287-456 |
| Cow position: | chr29:24660894-24660717 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 288-410 |
| Cow position: | chr29:34359608-34359731 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 288-441 |
| Cow position: | chr29:23242342-23242193 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 288-499 |
| Cow position: | chr29:22613637-22613416 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 289-407 |
| Cow position: | chr29:18218587-18218706 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 289-409 |
| Cow position: | chr29:659498-659373 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 289-409 |
| Cow position: | chr29:936418-936298 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-410 |
| Cow position: | chr29:36546567-36546692 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 289-445 |
| Cow position: | chr29:23678916-23678751 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 289-497 |
| Cow position: | chr29:1008035-1007810 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 213 |
| Conread position: | 289-498 |
| Cow position: | chr29:39038052-39038282 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 289-499 |
| Cow position: | chr29:12680375-12680142 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 289-499 |
| Cow position: | chr29:19949520-19949295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 89, 173 |
| Conread position: | 289-499 |
| Cow position: | chr29:22162049-22162263 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 289-499 |
| Cow position: | chr29:34773533-34773751 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 289-499 |
| Cow position: | chr29:35501449-35501668 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 289-499 |
| Cow position: | chr29:43441292-43441507 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 290-380 |
| Cow position: | chr29:13373535-13373445 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-410 |
| Cow position: | chr29:7414708-7414592 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 290-499 |
| Cow position: | chr29:9709907-9709680 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 292-385 |
| Cow position: | chr29:984959-984866 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-410 |
| Cow position: | chr29:20529149-20529028 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 292-410 |
| Cow position: | chr29:22736566-22736453 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 292-410 |
| Cow position: | chr29:32215916-32215798 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 69 |
| Conread position: | 292-445 |
| Cow position: | chr29:8331570-8331409 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 113 |
| Conread position: | 292-446 |
| Cow position: | chr29:12440975-12440822 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 292-499 |
| Cow position: | chr29:4070832-4070614 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 118, 181 |
| Conread position: | 292-499 |
| Cow position: | chr29:31593945-31594141 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 293-410 |
| Cow position: | chr29:10839150-10839031 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 293-489 |
| Cow position: | chr29:12890887-12890681 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 294-415 |
| Cow position: | chr29:35485787-35485664 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 294-422 |
| Cow position: | chr29:31835478-31835348 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 294-499 |
| Cow position: | chr29:12625788-12625990 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 294-499 |
| Cow position: | chr29:29308372-29308586 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 294-499 |
| Cow position: | chr29:31651612-31651397 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 295-398 |
| Cow position: | chr29:2623271-2623374 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-417 |
| Cow position: | chr29:18577650-18577527 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 296-499 |
| Cow position: | chr29:29769146-29769365 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 297-410 |
| Cow position: | chr29:4023202-4023088 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 297-499 |
| Cow position: | chr29:732817-732607 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 298-410 |
| Cow position: | chr29:17282267-17282157 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 298-413 |
| Cow position: | chr29:33143151-33143267 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 299-433 |
| Cow position: | chr29:44985466-44985327 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 299-495 |
| Cow position: | chr29:16279182-16278978 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 299-498 |
| Cow position: | chr29:11434317-11434106 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 300-499 |
| Cow position: | chr29:28196816-28197020 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 301-484 |
| Cow position: | chr29:22028758-22028951 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 88 |
| Conread position: | 302-499 |
| Cow position: | chr29:9378837-9378623 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 303-409 |
| Cow position: | chr29:28727025-28726918 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 303-417 |
| Cow position: | chr29:8841248-8841364 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 303-496 |
| Cow position: | chr29:19363909-19363700 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 303-499 |
| Cow position: | chr29:26779078-26778869 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 119 |
| Conread position: | 304-410 |
| Cow position: | chr29:40112579-40112472 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 304-498 |
| Cow position: | chr29:36781110-36781317 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 80 |
| Conread position: | 304-499 |
| Cow position: | chr29:26540340-26540554 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 102 |
| Conread position: | 304-499 |
| Cow position: | chr29:36952112-36952310 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 101, 145 |
| Conread position: | 305-434 |
| Cow position: | chr29:25669282-25669148 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 305-499 |
| Cow position: | chr29:26275800-26275596 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 72 |
| Conread position: | 306-405 |
| Cow position: | chr29:32655895-32655995 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 306-473 |
| Cow position: | chr29:40350883-40351063 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 306-494 |
| Cow position: | chr29:44681934-44682113 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 137, 85 |
| Conread position: | 306-495 |
| Cow position: | chr29:17110151-17109950 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 306-499 |
| Cow position: | chr29:36357326-36357115 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 164 |
| Conread position: | 307-420 |
| Cow position: | chr29:14442891-14443003 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 310-408 |
| Cow position: | chr29:3293137-3293039 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-499 |
| Cow position: | chr29:40117758-40117558 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 312-499 |
| Cow position: | chr29:1011401-1011594 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 316-499 |
| Cow position: | chr29:4423262-4423453 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 317-499 |
| Cow position: | chr29:39111137-39111325 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 323-498 |
| Cow position: | chr29:23825031-23825223 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 323-499 |
| Cow position: | chr29:17154943-17154765 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.