Cow genome map

Conread name: rhyp26c_h22.y1

Conread position: 107-422
Cow position: chr10:24755354-24755669 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 80, 23

Conread position: 122-228
Cow position: chr10:45299904-45299795 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 122-231
Cow position: chr10:9529897-9530006 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 100

Conread position: 122-239
Cow position: chr10:53762028-53762145 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 31

Conread position: 122-242
Cow position: chr10:9794568-9794695 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 122-242
Cow position: chr10:31250646-31250767 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 122-242
Cow position: chr10:68251905-68251783 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 122-243
Cow position: chr10:10124436-10124309 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 122-300
Cow position: chr10:48135294-48135491 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 122-351
Cow position: chr10:25978201-25978453 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 59, 235

Conread position: 122-368
Cow position: chr10:68566272-68566025 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 68, 152

Conread position: 122-381
Cow position: chr10:21424586-21424854 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 66, 207

Conread position: 122-438
Cow position: chr10:33002165-33002500 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 254
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 205

Conread position: 122-447
Cow position: chr10:20569215-20568865 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 61, 336

Conread position: 122-448
Cow position: chr10:6011959-6012305 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 171

Conread position: 123-239
Cow position: chr10:59153568-59153681 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 100
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 123-358
Cow position: chr10:25971184-25970939 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 47, 230

Conread position: 123-438
Cow position: chr10:46067197-46066882 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 65, 161

Conread position: 123-441
Cow position: chr10:8077069-8077417 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 66, 0

Conread position: 124-447
Cow position: chr10:46490971-46491300 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 110, 67

Conread position: 125-242
Cow position: chr10:11032411-11032525 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 12

Conread position: 125-355
Cow position: chr10:38772585-38772352 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 70, 26

Conread position: 126-231
Cow position: chr10:66753328-66753216 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 126-242
Cow position: chr10:38429460-38429579 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 126-387
Cow position: chr10:17928180-17927932 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 65

Conread position: 126-424
Cow position: chr10:65791903-65791596 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 188

Conread position: 126-442
Cow position: chr10:31911010-31910680 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 253

Conread position: 126-447
Cow position: chr10:8760074-8760395 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 65, 31

Conread position: 142-373
Cow position: chr10:23135384-23135134 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 46, 172

Conread position: 143-245
Cow position: chr10:42139684-42139789 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 144-380
Cow position: chr10:22977609-22977873 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 38, 209

Conread position: 146-448
Cow position: chr10:7328778-7328458 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 5

Conread position: 150-421
Cow position: chr10:9444996-9445256 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 137, 21

Conread position: 158-424
Cow position: chr10:60358745-60358487 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 43

Conread position: 158-448
Cow position: chr10:42454147-42453866 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 60

Conread position: 160-436
Cow position: chr10:44855120-44854833 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 170-397
Cow position: chr10:40646533-40646314 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 11

Conread position: 186-448
Cow position: chr10:2394471-2394734 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 176

Conread position: 200-386
Cow position: chr10:29339409-29339596 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 35, 17

Conread position: 202-447
Cow position: chr10:42459372-42459607 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 154, 44

Conread position: 202-448
Cow position: chr10:22049238-22048980 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 172

Conread position: 217-405
Cow position: chr10:52589726-52589919 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 151

Conread position: 223-401
Cow position: chr10:38429587-38429771 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 9, 0

Conread position: 225-421
Cow position: chr10:23948965-23949162 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 106

Conread position: 225-439
Cow position: chr10:28933699-28933479 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 7, 123

Conread position: 225-447
Cow position: chr10:16432348-16432578 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 7, 22

Conread position: 226-421
Cow position: chr10:20517222-20517020 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 226-448
Cow position: chr10:11032542-11032769 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 7

Conread position: 229-440
Cow position: chr10:53057720-53057924 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 56

Conread position: 233-406
Cow position: chr10:57563830-57563656 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 37

Conread position: 233-421
Cow position: chr10:19678818-19678625 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 233-425
Cow position: chr10:8648952-8648767 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 29

Conread position: 235-447
Cow position: chr10:51925365-51925149 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 42, 129

Conread position: 236-419
Cow position: chr10:23506547-23506726 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 74

Conread position: 236-435
Cow position: chr10:15618865-15619067 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 75

Conread position: 236-438
Cow position: chr10:46468743-46468954 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 170
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 180

Conread position: 236-440
Cow position: chr10:69544393-69544595 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 55

Conread position: 236-447
Cow position: chr10:6915062-6915268 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 48, 65

Conread position: 237-422
Cow position: chr10:6568175-6567991 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 104, 110

Conread position: 238-341
Cow position: chr10:19126965-19127074 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 238-357
Cow position: chr10:50044708-50044831 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 238-380
Cow position: chr10:24292257-24292404 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 79

Conread position: 238-386
Cow position: chr10:33732927-33733077 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 68, 42

Conread position: 238-397
Cow position: chr10:9568685-9568845 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 73

Conread position: 238-434
Cow position: chr10:59153711-59153895 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 95

Conread position: 238-437
Cow position: chr10:11060139-11059943 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 55

Conread position: 238-448
Cow position: chr10:65734885-65734676 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 122, 55

Conread position: 238-451
Cow position: chr10:64596370-64596155 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 8, 73

Conread position: 239-354
Cow position: chr10:51221125-51221246 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 239-394
Cow position: chr10:58399344-58399497 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 90

Conread position: 239-421
Cow position: chr10:21657363-21657177 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 56

Conread position: 239-424
Cow position: chr10:62516820-62516630 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 239-441
Cow position: chr10:31855271-31855064 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 168

Conread position: 239-444
Cow position: chr10:20478839-20478619 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 239-447
Cow position: chr10:36231913-36231716 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 187, 31

Conread position: 240-372
Cow position: chr10:17699076-17699213 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 27

Conread position: 240-385
Cow position: chr10:24276793-24276942 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 140

Conread position: 240-401
Cow position: chr10:25479041-25478876 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 137

Conread position: 240-423
Cow position: chr10:29279380-29279197 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 121

Conread position: 240-430
Cow position: chr10:30497566-30497388 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 240-436
Cow position: chr10:1351875-1351679 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 73

Conread position: 240-438
Cow position: chr10:3998842-3998643 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 55

Conread position: 240-447
Cow position: chr10:9341794-9342009 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 77

Conread position: 240-447
Cow position: chr10:10124282-10124073 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 122

Conread position: 240-447
Cow position: chr10:24786044-24785834 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 123

Conread position: 240-447
Cow position: chr10:35802430-35802640 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 122

Conread position: 240-447
Cow position: chr10:39314650-39314438 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 98

Conread position: 240-448
Cow position: chr10:13311670-13311460 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 44

Conread position: 240-448
Cow position: chr10:37528666-37528877 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 44

Conread position: 241-420
Cow position: chr10:6986383-6986207 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 109

Conread position: 241-420
Cow position: chr10:62286491-62286309 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 108

Conread position: 241-437
Cow position: chr10:22341505-22341307 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 66, 184

Conread position: 241-448
Cow position: chr10:19284422-19284633 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 175

Conread position: 245-362
Cow position: chr10:10753122-10753246 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 245-398
Cow position: chr10:38739480-38739332 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 151, 31

Conread position: 245-418
Cow position: chr10:45606490-45606667 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 123

Conread position: 245-438
Cow position: chr10:19590831-19591026 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 51

Conread position: 245-441
Cow position: chr10:27576399-27576214 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 81

Conread position: 245-447
Cow position: chr10:3180689-3180890 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 183, 16

Conread position: 245-448
Cow position: chr10:19704581-19704774 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 181, 31

Conread position: 245-448
Cow position: chr10:65130728-65130934 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 118

Conread position: 248-439
Cow position: chr10:57458648-57458456 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 112, 42

Conread position: 251-445
Cow position: chr10:47493275-47493474 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 112

Conread position: 254-417
Cow position: chr10:875214-875039 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 93

Conread position: 256-441
Cow position: chr10:41151733-41151552 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 6

Show alignments to all cow chromosomes.