Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 97-231 |
| Cow position: | chr12:39754389-39754249 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 122-238 |
| Cow position: | chr12:29691118-29691237 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 122-242 |
| Cow position: | chr12:18966678-18966802 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-243 |
| Cow position: | chr12:25312295-25312418 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 122-244 |
| Cow position: | chr12:31528777-31528907 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-245 |
| Cow position: | chr12:17262930-17262804 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-246 |
| Cow position: | chr12:18768992-18769123 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 123-229 |
| Cow position: | chr12:16205803-16205692 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 123-231 |
| Cow position: | chr12:24204235-24204347 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 124-229 |
| Cow position: | chr12:14855887-14855779 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 124-239 |
| Cow position: | chr12:5497749-5497867 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 124-394 |
| Cow position: | chr12:35985181-35984901 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 124-397 |
| Cow position: | chr12:13657667-13657934 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 125-450 |
| Cow position: | chr12:45541783-45541445 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 202 |
| Conread position: | 126-239 |
| Cow position: | chr12:40715970-40716086 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 126-242 |
| Cow position: | chr12:30065010-30064891 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 126-311 |
| Cow position: | chr12:45370355-45370544 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 157-448 |
| Cow position: | chr12:30438247-30437965 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 182-438 |
| Cow position: | chr12:27038767-27039043 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 181 |
| Conread position: | 221-386 |
| Cow position: | chr12:37394660-37394483 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 226-417 |
| Cow position: | chr12:1223404-1223596 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 226-420 |
| Cow position: | chr12:1487980-1487781 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 226-424 |
| Cow position: | chr12:27055543-27055348 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 134, 47 |
| Conread position: | 233-421 |
| Cow position: | chr12:35807612-35807419 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 233-448 |
| Cow position: | chr12:16851076-16851295 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 6, 131 |
| Conread position: | 234-404 |
| Cow position: | chr12:45555489-45555661 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 234-435 |
| Cow position: | chr12:47799894-47800088 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 236-420 |
| Cow position: | chr12:6164097-6164285 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 236-436 |
| Cow position: | chr12:5797623-5797815 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 236-437 |
| Cow position: | chr12:24020646-24020449 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 238-402 |
| Cow position: | chr12:23379503-23379333 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 239-437 |
| Cow position: | chr12:34103209-34103410 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 239-447 |
| Cow position: | chr12:794484-794265 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 133 |
| Conread position: | 240-375 |
| Cow position: | chr12:11696604-11696464 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 240-380 |
| Cow position: | chr12:27495935-27495789 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 240-394 |
| Cow position: | chr12:6117826-6117670 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 240-417 |
| Cow position: | chr12:38484468-38484651 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 150 |
| Conread position: | 240-422 |
| Cow position: | chr12:18417494-18417306 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 174 |
| Conread position: | 240-424 |
| Cow position: | chr12:44438934-44439111 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 240-436 |
| Cow position: | chr12:3757113-3757306 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 240-436 |
| Cow position: | chr12:18769149-18769348 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 240-438 |
| Cow position: | chr12:25312447-25312651 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 240-441 |
| Cow position: | chr12:8868953-8869162 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 240-447 |
| Cow position: | chr12:20312251-20312451 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 240-447 |
| Cow position: | chr12:47929137-47928929 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 240-448 |
| Cow position: | chr12:20326698-20326485 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 244-379 |
| Cow position: | chr12:23956859-23956727 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 245-436 |
| Cow position: | chr12:35354705-35354513 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 245-439 |
| Cow position: | chr12:3212247-3212050 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 120 |
| Conread position: | 245-448 |
| Cow position: | chr12:41979379-41979585 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 245-450 |
| Cow position: | chr12:28559215-28559009 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 246-447 |
| Cow position: | chr12:30688260-30688053 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 249-448 |
| Cow position: | chr12:30596384-30596177 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 253-448 |
| Cow position: | chr12:5539065-5539252 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 173, 24 |
| Conread position: | 274-448 |
| Cow position: | chr12:15232174-15232003 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 160, 86 |
Show alignments to all cow chromosomes.