Cow genome map

Conread name: rhyp26c_h22.y1

Conread position: 107-231
Cow position: chr13:33955172-33955045 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 118-447
Cow position: chr13:11290918-11290588 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 96

Conread position: 119-341
Cow position: chr13:6335705-6335477 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 138

Conread position: 120-242
Cow position: chr13:18550871-18550996 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 122-221
Cow position: chr13:35564180-35564280 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 122-231
Cow position: chr13:22082258-22082370 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 122-239
Cow position: chr13:14099243-14099123 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 122-239
Cow position: chr13:33347004-33347117 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 122-242
Cow position: chr13:32167442-32167320 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 66, 19

Conread position: 122-243
Cow position: chr13:7010341-7010464 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 49

Conread position: 122-244
Cow position: chr13:46430435-46430310 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 15

Conread position: 122-246
Cow position: chr13:20156355-20156481 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 101

Conread position: 122-318
Cow position: chr13:50739037-50739241 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 158

Conread position: 122-352
Cow position: chr13:26508352-26508602 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 66, 0

Conread position: 122-361
Cow position: chr13:33975299-33975563 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 184

Conread position: 122-375
Cow position: chr13:12521910-12521651 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 143

Conread position: 122-435
Cow position: chr13:46984928-46985230 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 23

Conread position: 122-437
Cow position: chr13:29820338-29820016 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 66, 140

Conread position: 122-448
Cow position: chr13:22887121-22886759 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 55, 282

Conread position: 123-239
Cow position: chr13:46353644-46353524 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 123-243
Cow position: chr13:9802937-9803060 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 123-377
Cow position: chr13:14085097-14085345 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 76

Conread position: 123-379
Cow position: chr13:20510454-20510198 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 77

Conread position: 123-417
Cow position: chr13:2302943-2302638 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 31

Conread position: 123-436
Cow position: chr13:14220366-14220690 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 54, 42

Conread position: 125-246
Cow position: chr13:35719266-35719142 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 125-436
Cow position: chr13:46298758-46298420 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 86

Conread position: 126-231
Cow position: chr13:58347957-58348064 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 62, 83

Conread position: 126-245
Cow position: chr13:30271195-30271317 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 126-376
Cow position: chr13:54865135-54864875 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 63, 31

Conread position: 126-422
Cow position: chr13:23816840-23816546 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 126-447
Cow position: chr13:46501194-46501536 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 37

Conread position: 128-242
Cow position: chr13:18761854-18761739 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 129-242
Cow position: chr13:18350711-18350827 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 172-448
Cow position: chr13:8839033-8838761 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 28

Conread position: 193-448
Cow position: chr13:21402822-21402562 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 9

Conread position: 203-356
Cow position: chr13:20057474-20057314 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 22, 141

Conread position: 206-406
Cow position: chr13:4423498-4423291 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 11

Conread position: 208-438
Cow position: chr13:661652-661412 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 32, 9

Conread position: 217-447
Cow position: chr13:55843481-55843716 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 60, 19

Conread position: 219-437
Cow position: chr13:54080810-54080583 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 10

Conread position: 220-382
Cow position: chr13:39699807-39699973 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 220-421
Cow position: chr13:6153782-6153575 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 132

Conread position: 220-436
Cow position: chr13:20839568-20839785 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 13

Conread position: 221-358
Cow position: chr13:20180416-20180561 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 221-436
Cow position: chr13:46284615-46284402 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 91

Conread position: 221-437
Cow position: chr13:1959013-1959231 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 150

Conread position: 226-421
Cow position: chr13:25435110-25434925 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 17

Conread position: 226-447
Cow position: chr13:14377986-14378218 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 131

Conread position: 230-449
Cow position: chr13:21209873-21210096 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 233-402
Cow position: chr13:24767401-24767574 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 0

Conread position: 234-448
Cow position: chr13:15869138-15869352 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 44

Conread position: 236-448
Cow position: chr13:24369600-24369818 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 237-398
Cow position: chr13:23586139-23586304 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 34, 127

Conread position: 237-447
Cow position: chr13:6945386-6945605 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 238-441
Cow position: chr13:43384602-43384408 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 41

Conread position: 238-441
Cow position: chr13:60487441-60487230 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 0

Conread position: 238-447
Cow position: chr13:6759774-6759558 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 176

Conread position: 239-351
Cow position: chr13:548529-548639 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 239-406
Cow position: chr13:22277149-22276977 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 15, 19

Conread position: 239-406
Cow position: chr13:34761701-34761860 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 51

Conread position: 239-421
Cow position: chr13:6616730-6616544 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 45

Conread position: 239-421
Cow position: chr13:11947717-11947524 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 239-436
Cow position: chr13:47502702-47502504 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 54

Conread position: 239-441
Cow position: chr13:32167292-32167081 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 131

Conread position: 239-448
Cow position: chr13:16343708-16343919 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 89

Conread position: 240-386
Cow position: chr13:12619091-12618940 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 48

Conread position: 240-396
Cow position: chr13:46430280-46430122 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 125

Conread position: 240-406
Cow position: chr13:29630880-29631047 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 73, 40

Conread position: 240-407
Cow position: chr13:17158852-17158681 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 66, 44

Conread position: 240-412
Cow position: chr13:9803092-9803262 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 123

Conread position: 240-421
Cow position: chr13:25531765-25531584 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 47, 121

Conread position: 240-424
Cow position: chr13:6894115-6894301 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 124

Conread position: 240-424
Cow position: chr13:8245309-8245125 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 73

Conread position: 240-424
Cow position: chr13:17346828-17347014 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 154
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 35, 13

Conread position: 240-436
Cow position: chr13:21275880-21276073 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 52

Conread position: 240-436
Cow position: chr13:38691522-38691322 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 55, 187

Conread position: 240-437
Cow position: chr13:18350863-18351062 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 37, 73

Conread position: 240-441
Cow position: chr13:35719116-35718908 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 36, 51

Conread position: 240-443
Cow position: chr13:6975768-6975561 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 53

Conread position: 240-447
Cow position: chr13:14226954-14227159 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 37, 104

Conread position: 240-448
Cow position: chr13:6621566-6621365 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 37

Conread position: 240-448
Cow position: chr13:8607495-8607286 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 56

Conread position: 240-448
Cow position: chr13:9125690-9125906 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 37, 167

Conread position: 240-448
Cow position: chr13:17886531-17886734 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 44

Conread position: 240-448
Cow position: chr13:47863677-47863466 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 106

Conread position: 240-450
Cow position: chr13:26261776-26261559 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 40

Conread position: 240-459
Cow position: chr13:50823528-50823312 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 34, 62

Conread position: 242-436
Cow position: chr13:52879437-52879630 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 46, 69

Conread position: 244-380
Cow position: chr13:34118277-34118138 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 37, 120

Conread position: 245-438
Cow position: chr13:1766798-1766991 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 100

Conread position: 245-438
Cow position: chr13:35654064-35653870 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 31, 89

Conread position: 245-439
Cow position: chr13:24539519-24539717 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 35, 182

Conread position: 245-448
Cow position: chr13:10932582-10932785 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 37

Conread position: 245-450
Cow position: chr13:11834448-11834250 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 108

Conread position: 246-385
Cow position: chr13:3796168-3796313 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 246-438
Cow position: chr13:38898213-38898030 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 179, 27

Conread position: 247-394
Cow position: chr13:53282919-53283081 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 247-441
Cow position: chr13:3016149-3015942 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 30, 109

Conread position: 247-447
Cow position: chr13:33282035-33282245 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 196

Conread position: 247-450
Cow position: chr13:12521756-12521549 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 169

Conread position: 249-358
Cow position: chr13:17439529-17439417 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 263-438
Cow position: chr13:32773418-32773585 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 163, 46

Show alignments to all cow chromosomes.