Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 108-447 |
| Cow position: | chr14:1706209-1706566 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 122-225 |
| Cow position: | chr14:10935779-10935674 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 122-231 |
| Cow position: | chr14:21369294-21369405 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr14:23008107-23008219 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr14:26153343-26153228 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-232 |
| Cow position: | chr14:37624844-37624731 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-239 |
| Cow position: | chr14:20865384-20865271 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 122-441 |
| Cow position: | chr14:43565953-43565618 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-447 |
| Cow position: | chr14:31399521-31399866 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-451 |
| Cow position: | chr14:9875337-9875682 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 123-239 |
| Cow position: | chr14:7582523-7582404 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-243 |
| Cow position: | chr14:21018040-21018163 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 123-424 |
| Cow position: | chr14:283786-283496 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 127-242 |
| Cow position: | chr14:29860808-29860919 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 136-389 |
| Cow position: | chr14:10742487-10742736 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 147-406 |
| Cow position: | chr14:35605323-35605062 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 148-397 |
| Cow position: | chr14:26627806-26628074 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 174-448 |
| Cow position: | chr14:25779111-25779385 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 208-374 |
| Cow position: | chr14:47591870-47591700 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 211-421 |
| Cow position: | chr14:21964171-21964382 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 217-444 |
| Cow position: | chr14:8964604-8964830 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 220-436 |
| Cow position: | chr14:25362407-25362622 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 221-406 |
| Cow position: | chr14:31479289-31479107 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 221-448 |
| Cow position: | chr14:26108692-26108931 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 224-438 |
| Cow position: | chr14:23107390-23107607 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 151 |
| Conread position: | 226-389 |
| Cow position: | chr14:19888172-19887995 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 226-392 |
| Cow position: | chr14:33337416-33337246 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 226-423 |
| Cow position: | chr14:34163806-34163611 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 226-435 |
| Cow position: | chr14:44861170-44860962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 200, 69 |
| Conread position: | 226-447 |
| Cow position: | chr14:724377-724601 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 226-447 |
| Cow position: | chr14:1553813-1554037 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 230-441 |
| Cow position: | chr14:47483763-47483979 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 233-417 |
| Cow position: | chr14:14182419-14182600 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 73 |
| Conread position: | 233-436 |
| Cow position: | chr14:35712107-35711905 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 237-406 |
| Cow position: | chr14:11615141-11614974 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 237-443 |
| Cow position: | chr14:26960350-26960155 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 181, 26 |
| Conread position: | 237-445 |
| Cow position: | chr14:34221132-34221342 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 126 |
| Conread position: | 238-446 |
| Cow position: | chr14:7582375-7582152 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 239-420 |
| Cow position: | chr14:16237425-16237245 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 239-436 |
| Cow position: | chr14:25378416-25378216 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 188 |
| Conread position: | 239-447 |
| Cow position: | chr14:9020106-9020316 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 86 |
| Conread position: | 240-372 |
| Cow position: | chr14:35819529-35819398 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 240-381 |
| Cow position: | chr14:41654319-41654174 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 240-404 |
| Cow position: | chr14:34777496-34777334 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 240-405 |
| Cow position: | chr14:15514095-15514265 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 240-422 |
| Cow position: | chr14:14221851-14222038 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-424 |
| Cow position: | chr14:10906795-10906982 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 240-434 |
| Cow position: | chr14:46751758-46751952 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 240-436 |
| Cow position: | chr14:18448931-18448733 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 240-436 |
| Cow position: | chr14:30662066-30662263 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 240-439 |
| Cow position: | chr14:21018192-21018391 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 240-447 |
| Cow position: | chr14:45292839-45292631 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 122, 63 |
| Conread position: | 240-448 |
| Cow position: | chr14:18984815-18984613 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 240-448 |
| Cow position: | chr14:35700506-35700722 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 240-448 |
| Cow position: | chr14:45605171-45605380 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 241-448 |
| Cow position: | chr14:39807378-39807168 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 245-339 |
| Cow position: | chr14:8518486-8518388 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 245-386 |
| Cow position: | chr14:20745665-20745803 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 245-421 |
| Cow position: | chr14:47974067-47974241 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 245-423 |
| Cow position: | chr14:12601960-12602140 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 245-423 |
| Cow position: | chr14:31785052-31785240 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 245-448 |
| Cow position: | chr14:12488614-12488411 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 247-435 |
| Cow position: | chr14:21691186-21691002 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 247-441 |
| Cow position: | chr14:37678915-37678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 248-447 |
| Cow position: | chr14:36440000-36440192 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 248-447 |
| Cow position: | chr14:37333778-37333981 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 257-448 |
| Cow position: | chr14:19957811-19957620 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 275-424 |
| Cow position: | chr14:3642743-3642593 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 53 |
| Conread position: | 280-450 |
| Cow position: | chr14:39616794-39616616 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.