Cow genome map

Conread name: rhyp26c_h22.y1

Conread position: 122-231
Cow position: chr15:3572727-3572615 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 122-231
Cow position: chr15:26421626-26421513 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 122-239
Cow position: chr15:11957512-11957635 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 122-239
Cow position: chr15:31599306-31599426 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 122-239
Cow position: chr15:31907622-31907741 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 52

Conread position: 122-242
Cow position: chr15:47821351-47821474 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 66, 0

Conread position: 122-243
Cow position: chr15:10569136-10569009 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 122-243
Cow position: chr15:36839201-36839077 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 122-243
Cow position: chr15:37964506-37964630 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 122-355
Cow position: chr15:23109311-23109061 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 66, 0

Conread position: 122-424
Cow position: chr15:8937010-8937310 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 68, 22

Conread position: 122-424
Cow position: chr15:23140152-23139844 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 122-446
Cow position: chr15:9178230-9177877 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 66, 136

Conread position: 122-448
Cow position: chr15:39364027-39363680 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 67, 261

Conread position: 122-452
Cow position: chr15:36659140-36658803 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 57, 175

Conread position: 123-237
Cow position: chr15:23548016-23547898 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 123-244
Cow position: chr15:46005675-46005550 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 123-393
Cow position: chr15:27892014-27892286 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 66, 102

Conread position: 123-447
Cow position: chr15:33680667-33680984 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 95

Conread position: 123-447
Cow position: chr15:34255749-34255412 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 236
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 34

Conread position: 124-252
Cow position: chr15:8022028-8022160 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 124-447
Cow position: chr15:7980165-7980486 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 85, 17

Conread position: 125-447
Cow position: chr15:40498318-40497978 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 216

Conread position: 126-231
Cow position: chr15:4278083-4277976 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 49, 55

Conread position: 126-231
Cow position: chr15:10189339-10189447 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 126-375
Cow position: chr15:23957689-23957934 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 101

Conread position: 126-392
Cow position: chr15:44297064-44297329 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 83

Conread position: 126-424
Cow position: chr15:24977198-24976880 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 127-239
Cow position: chr15:17788087-17788202 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 141-448
Cow position: chr15:49200755-49200449 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 150

Conread position: 143-422
Cow position: chr15:13545119-13545407 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 27, 210

Conread position: 144-440
Cow position: chr15:6565422-6565130 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 25

Conread position: 145-424
Cow position: chr15:4970769-4970487 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 10

Conread position: 158-450
Cow position: chr15:10570578-10570280 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 207
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 41

Conread position: 221-424
Cow position: chr15:22886654-22886860 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 147

Conread position: 222-441
Cow position: chr15:27863219-27862995 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 206

Conread position: 224-358
Cow position: chr15:33770727-33770865 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 226-417
Cow position: chr15:11957654-11957845 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 13

Conread position: 230-422
Cow position: chr15:34037081-34036882 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 95

Conread position: 233-437
Cow position: chr15:14322936-14322737 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 58

Conread position: 235-446
Cow position: chr15:22713708-22713495 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 125, 49

Conread position: 236-436
Cow position: chr15:44209690-44209893 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 10

Conread position: 236-437
Cow position: chr15:26701956-26701753 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 10, 79

Conread position: 236-441
Cow position: chr15:53118444-53118650 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 39, 68

Conread position: 236-447
Cow position: chr15:17683150-17683364 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 174

Conread position: 237-397
Cow position: chr15:39894711-39894872 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 124

Conread position: 237-424
Cow position: chr15:52154670-52154477 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 101

Conread position: 237-446
Cow position: chr15:16741915-16741701 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 78

Conread position: 237-447
Cow position: chr15:15215145-15215356 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 170
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 49, 9

Conread position: 238-405
Cow position: chr15:7883223-7883045 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 238-406
Cow position: chr15:11646364-11646196 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 122

Conread position: 238-435
Cow position: chr15:17213575-17213774 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 37, 61

Conread position: 238-446
Cow position: chr15:3572578-3572369 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 124

Conread position: 239-369
Cow position: chr15:5722544-5722407 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 239-380
Cow position: chr15:22854529-22854675 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 239-380
Cow position: chr15:50993863-50994013 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 127
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 239-404
Cow position: chr15:27281926-27282096 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 147
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 113

Conread position: 239-421
Cow position: chr15:20725492-20725306 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 37, 59

Conread position: 239-421
Cow position: chr15:21893907-21894090 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 122

Conread position: 239-425
Cow position: chr15:26903322-26903506 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 56

Conread position: 239-436
Cow position: chr15:22160710-22160904 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 51

Conread position: 239-441
Cow position: chr15:13387205-13387413 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 239-447
Cow position: chr15:27247627-27247849 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 144

Conread position: 240-342
Cow position: chr15:16824958-16825064 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 240-378
Cow position: chr15:23957829-23957968 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 120

Conread position: 240-385
Cow position: chr15:12673774-12673916 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 122
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 120, 30

Conread position: 240-404
Cow position: chr15:31599459-31599624 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 76

Conread position: 240-404
Cow position: chr15:31907774-31907941 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 78

Conread position: 240-424
Cow position: chr15:44252490-44252674 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 123

Conread position: 240-436
Cow position: chr15:10615605-10615418 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 240-436
Cow position: chr15:37964659-37964864 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 36, 129

Conread position: 240-441
Cow position: chr15:20117237-20117440 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 123

Conread position: 240-446
Cow position: chr15:26421473-26421264 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 37, 118

Conread position: 240-446
Cow position: chr15:31545226-31545014 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 135

Conread position: 240-446
Cow position: chr15:40009524-40009315 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 125

Conread position: 240-447
Cow position: chr15:21836808-21837025 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 132

Conread position: 240-447
Cow position: chr15:31616877-31616668 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 120

Conread position: 240-447
Cow position: chr15:43248645-43248437 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 124

Conread position: 240-448
Cow position: chr15:1830687-1830902 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 240-448
Cow position: chr15:22136812-22137020 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 73

Conread position: 240-448
Cow position: chr15:25111042-25110828 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 37, 15

Conread position: 240-452
Cow position: chr15:21522913-21523131 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 145

Conread position: 240-460
Cow position: chr15:42195139-42194932 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 5, 35

Conread position: 241-446
Cow position: chr15:1329975-1329766 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 242-406
Cow position: chr15:9072301-9072137 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 121

Conread position: 245-380
Cow position: chr15:4277932-4277797 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 31, 100

Conread position: 245-406
Cow position: chr15:36671906-36671741 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 31, 0

Conread position: 245-424
Cow position: chr15:4856919-4857107 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 0

Conread position: 245-447
Cow position: chr15:19812781-19812986 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 45

Conread position: 245-447
Cow position: chr15:29272320-29272527 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 32, 114

Conread position: 245-448
Cow position: chr15:24285112-24285323 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 246-406
Cow position: chr15:51583361-51583516 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 246-436
Cow position: chr15:12163386-12163199 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 68

Conread position: 247-447
Cow position: chr15:6282798-6282602 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 29, 69

Conread position: 249-436
Cow position: chr15:8382808-8382618 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 164

Conread position: 250-424
Cow position: chr15:20347384-20347564 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 28, 156

Conread position: 272-424
Cow position: chr15:50964424-50964577 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 88, 0

Show alignments to all cow chromosomes.