Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 121-231 |
| Cow position: | chr16:31490433-31490321 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 122-229 |
| Cow position: | chr16:16546190-16546080 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr16:9510757-9510869 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-239 |
| Cow position: | chr16:10303633-10303752 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 122-241 |
| Cow position: | chr16:47368875-47368754 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-242 |
| Cow position: | chr16:18427301-18427178 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-242 |
| Cow position: | chr16:45693264-45693139 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 122-255 |
| Cow position: | chr16:19977081-19976947 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 96 |
| Conread position: | 122-323 |
| Cow position: | chr16:38621073-38620859 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 122-341 |
| Cow position: | chr16:47192275-47192040 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 122-380 |
| Cow position: | chr16:20260591-20260310 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 122-404 |
| Cow position: | chr16:12612602-12612889 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 110, 68 |
| Conread position: | 122-421 |
| Cow position: | chr16:3628912-3628597 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 257 |
| Conread position: | 122-423 |
| Cow position: | chr16:28266913-28267237 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 122-426 |
| Cow position: | chr16:23978316-23978631 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 303 |
| Conread position: | 122-447 |
| Cow position: | chr16:15320366-15320716 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 58, 310 |
| Conread position: | 122-447 |
| Cow position: | chr16:44898638-44898978 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 123-231 |
| Cow position: | chr16:4499545-4499436 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 123-447 |
| Cow position: | chr16:51879887-51880253 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 124-239 |
| Cow position: | chr16:55586495-55586611 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 103 |
| Conread position: | 124-438 |
| Cow position: | chr16:23990396-23990725 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 124-443 |
| Cow position: | chr16:9845627-9845956 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 124-448 |
| Cow position: | chr16:29510259-29510581 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 126-231 |
| Cow position: | chr16:52222216-52222324 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 126-424 |
| Cow position: | chr16:52565533-52565232 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 127-366 |
| Cow position: | chr16:6998435-6998176 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 133-436 |
| Cow position: | chr16:13181809-13181507 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 142-246 |
| Cow position: | chr16:11153094-11153202 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 160-435 |
| Cow position: | chr16:55586558-55586832 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 165-441 |
| Cow position: | chr16:13306830-13307104 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 170-380 |
| Cow position: | chr16:38620988-38620780 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 172-405 |
| Cow position: | chr16:11008374-11008139 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 196-422 |
| Cow position: | chr16:43765313-43765086 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 203-436 |
| Cow position: | chr16:32384824-32385053 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 206-423 |
| Cow position: | chr16:4763129-4762917 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 217-420 |
| Cow position: | chr16:21905150-21904944 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 219-441 |
| Cow position: | chr16:5243952-5243722 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 221-395 |
| Cow position: | chr16:50014509-50014331 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 224-447 |
| Cow position: | chr16:16546052-16545824 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 225-447 |
| Cow position: | chr16:3918512-3918282 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 7, 128 |
| Conread position: | 226-401 |
| Cow position: | chr16:25463753-25463574 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 226-448 |
| Cow position: | chr16:14799766-14799988 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 229-389 |
| Cow position: | chr16:16524382-16524548 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 233-447 |
| Cow position: | chr16:46253716-46253936 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 173 |
| Conread position: | 234-443 |
| Cow position: | chr16:32781333-32781122 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 234-447 |
| Cow position: | chr16:20685476-20685679 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 234-448 |
| Cow position: | chr16:22786078-22786294 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 132 |
| Conread position: | 236-386 |
| Cow position: | chr16:25803435-25803589 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 236-397 |
| Cow position: | chr16:40732184-40732023 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 236-419 |
| Cow position: | chr16:28816127-28816313 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 236-421 |
| Cow position: | chr16:48369983-48370167 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 135 |
| Conread position: | 236-423 |
| Cow position: | chr16:49580053-49579859 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 236-448 |
| Cow position: | chr16:33508028-33507815 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 237-438 |
| Cow position: | chr16:34840785-34840582 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 72, 102 |
| Conread position: | 237-448 |
| Cow position: | chr16:52219047-52218841 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 238-447 |
| Cow position: | chr16:27005168-27004953 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 137 |
| Conread position: | 239-447 |
| Cow position: | chr16:34210445-34210660 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 240-402 |
| Cow position: | chr16:39237907-39237743 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 240-419 |
| Cow position: | chr16:13973326-13973498 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 240-421 |
| Cow position: | chr16:16548572-16548392 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 240-422 |
| Cow position: | chr16:8323020-8323206 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 240-422 |
| Cow position: | chr16:43850869-43851046 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 240-436 |
| Cow position: | chr16:4875957-4875765 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 240-441 |
| Cow position: | chr16:12169728-12169931 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 240-441 |
| Cow position: | chr16:18427149-18426944 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 240-444 |
| Cow position: | chr16:13601118-13601313 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 240-447 |
| Cow position: | chr16:4499398-4499194 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 240-447 |
| Cow position: | chr16:31419408-31419198 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 92 |
| Conread position: | 240-447 |
| Cow position: | chr16:36930356-36930567 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 240-447 |
| Cow position: | chr16:53267686-53267482 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 240-448 |
| Cow position: | chr16:4979762-4979568 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 240-448 |
| Cow position: | chr16:16402358-16402575 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 241-448 |
| Cow position: | chr16:42257411-42257207 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 242-417 |
| Cow position: | chr16:20633918-20634093 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 245-380 |
| Cow position: | chr16:43815867-43815735 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 45 |
| Conread position: | 246-420 |
| Cow position: | chr16:56613277-56613102 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 247-422 |
| Cow position: | chr16:18557308-18557485 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 249-403 |
| Cow position: | chr16:17606240-17606093 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 249-423 |
| Cow position: | chr16:2308640-2308464 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 266-424 |
| Cow position: | chr16:23674097-23673939 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 276-436 |
| Cow position: | chr16:12738255-12738095 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 283-424 |
| Cow position: | chr16:13683856-13683992 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.