Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 107-242 |
| Cow position: | chr17:32457397-32457535 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 119-351 |
| Cow position: | chr17:20344750-20344510 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 120-342 |
| Cow position: | chr17:1455783-1456006 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 122-224 |
| Cow position: | chr17:27781223-27781119 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 100 |
| Conread position: | 122-226 |
| Cow position: | chr17:10271648-10271542 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-231 |
| Cow position: | chr17:9059992-9060104 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-242 |
| Cow position: | chr17:24339325-24339202 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-246 |
| Cow position: | chr17:144023-144149 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-246 |
| Cow position: | chr17:25708113-25707986 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 122-252 |
| Cow position: | chr17:23318164-23318298 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 122-350 |
| Cow position: | chr17:33930316-33930073 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 217 |
| Conread position: | 122-385 |
| Cow position: | chr17:7595307-7595015 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 66, 186 |
| Conread position: | 122-439 |
| Cow position: | chr17:16307514-16307184 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 45, 255 |
| Conread position: | 122-446 |
| Cow position: | chr17:17452467-17452807 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 256 |
| Conread position: | 122-448 |
| Cow position: | chr17:21419546-21419225 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 122-448 |
| Cow position: | chr17:30236350-30236021 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 123-418 |
| Cow position: | chr17:13671928-13672245 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 65, 197 |
| Conread position: | 123-447 |
| Cow position: | chr17:18246213-18245869 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 124-439 |
| Cow position: | chr17:20815496-20815178 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 124-441 |
| Cow position: | chr17:27505251-27504926 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 199 |
| Conread position: | 125-231 |
| Cow position: | chr17:33903770-33903877 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 126-447 |
| Cow position: | chr17:9778798-9778455 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 130-447 |
| Cow position: | chr17:11837552-11837216 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 207-447 |
| Cow position: | chr17:11171827-11171590 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 220-422 |
| Cow position: | chr17:44232688-44232899 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 221-362 |
| Cow position: | chr17:21373700-21373558 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 221-377 |
| Cow position: | chr17:7614356-7614516 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 221-424 |
| Cow position: | chr17:10271519-10271310 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 221-447 |
| Cow position: | chr17:32457542-32457786 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 157 |
| Conread position: | 222-421 |
| Cow position: | chr17:33926101-33926303 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 226-391 |
| Cow position: | chr17:26162407-26162577 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 226-446 |
| Cow position: | chr17:33999031-33999249 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 226-447 |
| Cow position: | chr17:8861162-8861387 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 209 |
| Conread position: | 226-449 |
| Cow position: | chr17:2079779-2079552 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 135 |
| Conread position: | 233-406 |
| Cow position: | chr17:28359851-28359680 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 233-447 |
| Cow position: | chr17:27780862-27780649 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 236-351 |
| Cow position: | chr17:25340142-25340265 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 236-380 |
| Cow position: | chr17:35212374-35212229 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 79 |
| Conread position: | 236-406 |
| Cow position: | chr17:21259939-21260114 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 236-421 |
| Cow position: | chr17:26085043-26084856 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 236-444 |
| Cow position: | chr17:9697691-9697908 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 175 |
| Conread position: | 236-447 |
| Cow position: | chr17:2006698-2006495 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 152, 43 |
| Conread position: | 236-448 |
| Cow position: | chr17:38276695-38276485 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 237-448 |
| Cow position: | chr17:30204663-30204448 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 238-386 |
| Cow position: | chr17:36217175-36217328 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 238-417 |
| Cow position: | chr17:37776124-37775946 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 238-417 |
| Cow position: | chr17:37778614-37778792 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 238-447 |
| Cow position: | chr17:25707963-25707749 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 238-447 |
| Cow position: | chr17:37414889-37415106 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 239-421 |
| Cow position: | chr17:3466831-3466657 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 239-423 |
| Cow position: | chr17:10634056-10634237 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 239-437 |
| Cow position: | chr17:5041677-5041871 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 181, 45 |
| Conread position: | 239-446 |
| Cow position: | chr17:5997094-5997300 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 239-447 |
| Cow position: | chr17:25590230-25590442 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 108 |
| Conread position: | 239-448 |
| Cow position: | chr17:9565312-9565102 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 240-406 |
| Cow position: | chr17:28847663-28847831 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 240-418 |
| Cow position: | chr17:10458934-10459111 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 240-438 |
| Cow position: | chr17:23879824-23880025 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 240-438 |
| Cow position: | chr17:25181140-25181346 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 240-439 |
| Cow position: | chr17:34864576-34864374 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 240-443 |
| Cow position: | chr17:18824796-18824587 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 240-447 |
| Cow position: | chr17:9117650-9117437 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 240-447 |
| Cow position: | chr17:9853990-9853780 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 240-447 |
| Cow position: | chr17:25755796-25755578 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-447 |
| Cow position: | chr17:27429579-27429372 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 240-448 |
| Cow position: | chr17:1526351-1526560 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 240-448 |
| Cow position: | chr17:8230625-8230410 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 240-448 |
| Cow position: | chr17:8279705-8279914 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 240-448 |
| Cow position: | chr17:11101797-11102001 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 240-448 |
| Cow position: | chr17:36533371-36533167 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 240-448 |
| Cow position: | chr17:39012729-39012511 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 245-423 |
| Cow position: | chr17:35991096-35990916 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 245-435 |
| Cow position: | chr17:9293750-9293558 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 245-447 |
| Cow position: | chr17:18494517-18494721 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 245-448 |
| Cow position: | chr17:144180-144379 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 245-448 |
| Cow position: | chr17:5380969-5380759 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 249-448 |
| Cow position: | chr17:36817936-36817735 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 250-447 |
| Cow position: | chr17:10220469-10220275 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 110, 34 |
| Conread position: | 282-424 |
| Cow position: | chr17:16463150-16463295 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 124 |
Show alignments to all cow chromosomes.