Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 122-239 |
| Cow position: | chr18:24363976-24364096 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-242 |
| Cow position: | chr18:30566476-30566598 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 122-275 |
| Cow position: | chr18:28794921-28794762 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 98 |
| Conread position: | 122-424 |
| Cow position: | chr18:51537602-51537914 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 122-436 |
| Cow position: | chr18:33275373-33275040 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 122-447 |
| Cow position: | chr18:51412428-51412095 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 194 |
| Conread position: | 123-255 |
| Cow position: | chr18:55696941-55697076 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 123-394 |
| Cow position: | chr18:15831514-15831802 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 257 |
| Conread position: | 124-231 |
| Cow position: | chr18:5756060-5755949 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 125-246 |
| Cow position: | chr18:10101568-10101444 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 126-380 |
| Cow position: | chr18:41073065-41072791 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 126-448 |
| Cow position: | chr18:4578408-4578749 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 127-388 |
| Cow position: | chr18:35767248-35766970 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 196 |
| Conread position: | 129-251 |
| Cow position: | chr18:46320905-46321028 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 155-436 |
| Cow position: | chr18:5571175-5570887 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 174-405 |
| Cow position: | chr18:25984571-25984808 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 217-421 |
| Cow position: | chr18:29796475-29796676 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 220-439 |
| Cow position: | chr18:25002929-25003145 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 225-397 |
| Cow position: | chr18:36123485-36123306 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 226-446 |
| Cow position: | chr18:16726591-16726368 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 229-438 |
| Cow position: | chr18:36478139-36477928 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 229-447 |
| Cow position: | chr18:50566815-50566593 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 236-418 |
| Cow position: | chr18:11183879-11183693 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 236-423 |
| Cow position: | chr18:17324650-17324457 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 236-444 |
| Cow position: | chr18:17228032-17228243 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 236-448 |
| Cow position: | chr18:21939294-21939076 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 237-424 |
| Cow position: | chr18:56476334-56476156 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 237-439 |
| Cow position: | chr18:34052061-34052256 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 237-448 |
| Cow position: | chr18:50993339-50993550 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 123, 38 |
| Conread position: | 238-405 |
| Cow position: | chr18:19363868-19363696 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 8, 126 |
| Conread position: | 239-421 |
| Cow position: | chr18:21195414-21195589 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 239-446 |
| Cow position: | chr18:16842132-16842343 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 127 |
| Conread position: | 239-447 |
| Cow position: | chr18:19387507-19387301 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 74 |
| Conread position: | 239-447 |
| Cow position: | chr18:35797555-35797346 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 239-448 |
| Cow position: | chr18:45104514-45104726 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 240-358 |
| Cow position: | chr18:35749051-35749168 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 240-397 |
| Cow position: | chr18:48036706-48036541 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-421 |
| Cow position: | chr18:29356697-29356881 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 240-421 |
| Cow position: | chr18:42747522-42747344 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 240-424 |
| Cow position: | chr18:21176117-21175928 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-424 |
| Cow position: | chr18:34325023-34325214 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-439 |
| Cow position: | chr18:42061003-42060808 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 240-448 |
| Cow position: | chr18:13359994-13359782 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 240-448 |
| Cow position: | chr18:23807943-23808153 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 240-448 |
| Cow position: | chr18:33157746-33157541 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 241-406 |
| Cow position: | chr18:19273173-19273341 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 241-443 |
| Cow position: | chr18:55697094-55697291 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 242-439 |
| Cow position: | chr18:45961341-45961528 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 242-448 |
| Cow position: | chr18:38344733-38344524 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 245-418 |
| Cow position: | chr18:43463483-43463653 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 245-422 |
| Cow position: | chr18:23360559-23360377 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 245-425 |
| Cow position: | chr18:13497671-13497862 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 245-439 |
| Cow position: | chr18:10101415-10101223 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 87, 126 |
| Conread position: | 246-402 |
| Cow position: | chr18:4040103-4039946 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 247-448 |
| Cow position: | chr18:40202885-40203079 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 249-447 |
| Cow position: | chr18:50700588-50700386 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 256-448 |
| Cow position: | chr18:32860557-32860368 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 262-423 |
| Cow position: | chr18:50927640-50927486 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 11 |
Show alignments to all cow chromosomes.