Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 119-207 |
| Cow position: | chr19:46306229-46306320 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 119-305 |
| Cow position: | chr19:14254622-14254813 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 183 |
| Conread position: | 122-238 |
| Cow position: | chr19:48479083-48478964 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-239 |
| Cow position: | chr19:15936938-15936819 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 122-239 |
| Cow position: | chr19:21091200-21091080 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-240 |
| Cow position: | chr19:21284975-21285096 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 118 |
| Conread position: | 122-242 |
| Cow position: | chr19:2342584-2342462 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 122-242 |
| Cow position: | chr19:36318411-36318288 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-252 |
| Cow position: | chr19:2770911-2771044 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 122-373 |
| Cow position: | chr19:9100253-9099977 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 263 |
| Conread position: | 122-448 |
| Cow position: | chr19:42216175-42215852 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 123-239 |
| Cow position: | chr19:7838943-7839059 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 123-242 |
| Cow position: | chr19:952793-952673 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 123-263 |
| Cow position: | chr19:2280540-2280682 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 123-424 |
| Cow position: | chr19:31380902-31381230 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 123-448 |
| Cow position: | chr19:33281437-33281112 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 117, 75 |
| Conread position: | 124-242 |
| Cow position: | chr19:11636838-11636959 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 125-231 |
| Cow position: | chr19:25271316-25271425 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 126-224 |
| Cow position: | chr19:11147522-11147621 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 126-242 |
| Cow position: | chr19:53738436-53738317 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 126-447 |
| Cow position: | chr19:43517317-43516978 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 135-350 |
| Cow position: | chr19:31614198-31613981 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 6 |
| Conread position: | 162-441 |
| Cow position: | chr19:12170577-12170861 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 170-447 |
| Cow position: | chr19:5648627-5648909 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 173-448 |
| Cow position: | chr19:36059954-36059673 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 202-447 |
| Cow position: | chr19:6516261-6516003 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 210-439 |
| Cow position: | chr19:25637514-25637747 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 217-362 |
| Cow position: | chr19:1402830-1402982 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 217-421 |
| Cow position: | chr19:11191641-11191852 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 219-448 |
| Cow position: | chr19:56018553-56018782 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 221-393 |
| Cow position: | chr19:15936809-15936635 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 221-423 |
| Cow position: | chr19:21285106-21285317 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 226-424 |
| Cow position: | chr19:39986578-39986775 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 226-447 |
| Cow position: | chr19:2260164-2260383 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 228-405 |
| Cow position: | chr19:28921790-28921609 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 229-447 |
| Cow position: | chr19:55236453-55236235 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 234-421 |
| Cow position: | chr19:38907398-38907585 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 234-436 |
| Cow position: | chr19:18788145-18788349 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 234-448 |
| Cow position: | chr19:31395936-31396149 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 236-356 |
| Cow position: | chr19:51536523-51536399 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 236-447 |
| Cow position: | chr19:41212094-41212310 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 236-448 |
| Cow position: | chr19:20670940-20671160 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 236-448 |
| Cow position: | chr19:35742116-35741898 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 237-451 |
| Cow position: | chr19:3084253-3084469 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 238-380 |
| Cow position: | chr19:7839089-7839233 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 239-436 |
| Cow position: | chr19:44490048-44489845 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 166 |
| Conread position: | 239-447 |
| Cow position: | chr19:2821535-2821321 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 239-448 |
| Cow position: | chr19:21335654-21335871 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 193 |
| Conread position: | 240-347 |
| Cow position: | chr19:5279820-5279706 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-380 |
| Cow position: | chr19:22168470-22168325 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 240-386 |
| Cow position: | chr19:20661460-20661611 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 240-404 |
| Cow position: | chr19:904929-904774 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 120, 44 |
| Conread position: | 240-404 |
| Cow position: | chr19:43727089-43726932 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 240-406 |
| Cow position: | chr19:19924648-19924819 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 240-406 |
| Cow position: | chr19:47479667-47479840 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 240-421 |
| Cow position: | chr19:33823269-33823087 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 240-422 |
| Cow position: | chr19:48409462-48409284 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 240-424 |
| Cow position: | chr19:53738287-53738102 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 240-436 |
| Cow position: | chr19:48478930-48478729 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 240-438 |
| Cow position: | chr19:36976962-36977165 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 240-441 |
| Cow position: | chr19:6880923-6881130 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 240-446 |
| Cow position: | chr19:19673365-19673162 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 240-447 |
| Cow position: | chr19:18242476-18242679 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 240-447 |
| Cow position: | chr19:19661997-19661784 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 240-447 |
| Cow position: | chr19:36380195-36379991 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 240-448 |
| Cow position: | chr19:35782180-35782391 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 241-421 |
| Cow position: | chr19:10171953-10171771 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 245-424 |
| Cow position: | chr19:1713197-1713376 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 245-441 |
| Cow position: | chr19:31827044-31826858 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 245-447 |
| Cow position: | chr19:9703890-9704088 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 245-448 |
| Cow position: | chr19:9387582-9387375 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 113 |
| Conread position: | 245-463 |
| Cow position: | chr19:2342428-2342202 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 246-448 |
| Cow position: | chr19:54225362-54225557 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 179, 23 |
| Conread position: | 248-376 |
| Cow position: | chr19:471977-471850 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 248-385 |
| Cow position: | chr19:15796609-15796474 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 248-424 |
| Cow position: | chr19:24689221-24689050 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 283-394 |
| Cow position: | chr19:11147614-11147725 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 106 |
| Conread position: | 285-448 |
| Cow position: | chr19:33622210-33622047 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 141, 75 |
Show alignments to all cow chromosomes.