Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 122-231 |
| Cow position: | chr20:13608909-13609021 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-232 |
| Cow position: | chr20:23604575-23604688 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-243 |
| Cow position: | chr20:19865407-19865284 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 105 |
| Conread position: | 122-436 |
| Cow position: | chr20:14471412-14471739 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 286 |
| Conread position: | 122-438 |
| Cow position: | chr20:220768-220423 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 123-381 |
| Cow position: | chr20:11355346-11355077 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 66, 216 |
| Conread position: | 123-448 |
| Cow position: | chr20:32668129-32667785 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 124-226 |
| Cow position: | chr20:35683248-35683353 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 125-243 |
| Cow position: | chr20:34178321-34178441 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 125-336 |
| Cow position: | chr20:21236813-21236586 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 126-229 |
| Cow position: | chr20:27001542-27001436 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 126-244 |
| Cow position: | chr20:14679773-14679652 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 126-352 |
| Cow position: | chr20:17397108-17397342 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 143-447 |
| Cow position: | chr20:18491297-18490983 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 138 |
| Conread position: | 202-421 |
| Cow position: | chr20:33435121-33435345 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 217-439 |
| Cow position: | chr20:3599366-3599582 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 217-439 |
| Cow position: | chr20:40511726-40511951 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 220-370 |
| Cow position: | chr20:19339845-19340001 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 224-447 |
| Cow position: | chr20:14831594-14831817 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 226-447 |
| Cow position: | chr20:26077099-26076881 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 226-448 |
| Cow position: | chr20:22920147-22920365 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 227-448 |
| Cow position: | chr20:13465529-13465313 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 228-447 |
| Cow position: | chr20:19266171-19265953 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 132, 20 |
| Conread position: | 229-449 |
| Cow position: | chr20:33178505-33178732 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 233-358 |
| Cow position: | chr20:23235049-23234919 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 233-446 |
| Cow position: | chr20:27977694-27977913 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 234-414 |
| Cow position: | chr20:12362853-12363032 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 127 |
| Conread position: | 236-337 |
| Cow position: | chr20:12676454-12676349 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 236-351 |
| Cow position: | chr20:39056031-39056151 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 236-386 |
| Cow position: | chr20:8261919-8261766 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 236-394 |
| Cow position: | chr20:7600771-7600931 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 126 |
| Conread position: | 236-424 |
| Cow position: | chr20:38028001-38028186 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 236-447 |
| Cow position: | chr20:13048404-13048622 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 238-418 |
| Cow position: | chr20:8578255-8578071 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 238-420 |
| Cow position: | chr20:13821573-13821761 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 238-436 |
| Cow position: | chr20:7182667-7182866 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 186 |
| Conread position: | 238-447 |
| Cow position: | chr20:18413863-18413653 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 239-392 |
| Cow position: | chr20:15148008-15148159 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 239-418 |
| Cow position: | chr20:24391986-24391807 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 240-424 |
| Cow position: | chr20:4204297-4204113 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 240-438 |
| Cow position: | chr20:8020903-8020700 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 240-447 |
| Cow position: | chr20:4359655-4359857 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 240-447 |
| Cow position: | chr20:14679626-14679414 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 126 |
| Conread position: | 240-448 |
| Cow position: | chr20:4909019-4908800 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 240-448 |
| Cow position: | chr20:20471787-20471585 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 240-448 |
| Cow position: | chr20:41500533-41500748 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 245-422 |
| Cow position: | chr20:4894893-4895070 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 245-447 |
| Cow position: | chr20:15576887-15577095 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 245-448 |
| Cow position: | chr20:17670182-17669977 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 257-447 |
| Cow position: | chr20:3892024-3891840 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 10 |
Show alignments to all cow chromosomes.