Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 99-447 |
| Cow position: | chr21:36819025-36819396 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 108-242 |
| Cow position: | chr21:48290864-48290999 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 122-217 |
| Cow position: | chr21:8282443-8282350 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:11675873-11675985 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:15239459-15239347 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:17806957-17807069 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:31576672-31576560 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:35997352-35997240 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-231 |
| Cow position: | chr21:37121032-37121141 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 122-243 |
| Cow position: | chr21:31662184-31662056 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-243 |
| Cow position: | chr21:33947073-33947197 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 122-244 |
| Cow position: | chr21:13256333-13256457 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 122-447 |
| Cow position: | chr21:23478551-23478902 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 122-447 |
| Cow position: | chr21:24714812-24714470 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 91, 53 |
| Conread position: | 122-447 |
| Cow position: | chr21:44093943-44093596 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 123-244 |
| Cow position: | chr21:34565035-34565159 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-315 |
| Cow position: | chr21:37848403-37848185 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 123-418 |
| Cow position: | chr21:8187355-8187666 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 124-239 |
| Cow position: | chr21:13418056-13418174 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 124-394 |
| Cow position: | chr21:24674894-24674622 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 125-244 |
| Cow position: | chr21:6058470-6058591 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 126-239 |
| Cow position: | chr21:36371660-36371544 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 126-358 |
| Cow position: | chr21:31200336-31200078 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 126-447 |
| Cow position: | chr21:42053103-42053448 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 243 |
| Conread position: | 127-387 |
| Cow position: | chr21:18782409-18782144 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 129-447 |
| Cow position: | chr21:28997755-28998089 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 140-421 |
| Cow position: | chr21:21223408-21223134 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 147-447 |
| Cow position: | chr21:8420780-8420471 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 177 |
| Conread position: | 172-446 |
| Cow position: | chr21:4723573-4723297 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 188-421 |
| Cow position: | chr21:4276513-4276747 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 193-447 |
| Cow position: | chr21:12973166-12973436 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 204-438 |
| Cow position: | chr21:23449637-23449402 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 217-360 |
| Cow position: | chr21:9940138-9940291 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-442 |
| Cow position: | chr21:33563058-33562837 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 221-423 |
| Cow position: | chr21:25286557-25286352 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 226-448 |
| Cow position: | chr21:23499788-23500005 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 229-419 |
| Cow position: | chr21:47823237-47823425 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 233-451 |
| Cow position: | chr21:4098904-4098688 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 236-398 |
| Cow position: | chr21:37886441-37886278 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 236-405 |
| Cow position: | chr21:41583302-41583130 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 236-406 |
| Cow position: | chr21:6058611-6058780 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 236-406 |
| Cow position: | chr21:31764099-31764279 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 236-438 |
| Cow position: | chr21:12087621-12087420 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 236-447 |
| Cow position: | chr21:33947222-33947427 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 236-448 |
| Cow position: | chr21:44331264-44331469 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 237-340 |
| Cow position: | chr21:24669425-24669318 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 238-424 |
| Cow position: | chr21:44754750-44754935 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 238-447 |
| Cow position: | chr21:28944337-28944547 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 239-447 |
| Cow position: | chr21:23586907-23586693 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 239-448 |
| Cow position: | chr21:45330574-45330792 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 240-357 |
| Cow position: | chr21:41514831-41514710 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 240-393 |
| Cow position: | chr21:6316241-6316078 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-402 |
| Cow position: | chr21:29978734-29978899 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 44 |
| Conread position: | 240-422 |
| Cow position: | chr21:33997203-33997378 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 240-424 |
| Cow position: | chr21:49662098-49662275 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 240-437 |
| Cow position: | chr21:29943028-29942834 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 120, 37 |
| Conread position: | 240-439 |
| Cow position: | chr21:5425999-5425808 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 240-441 |
| Cow position: | chr21:21480157-21480356 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 240-447 |
| Cow position: | chr21:3813458-3813666 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 240-447 |
| Cow position: | chr21:23786056-23785848 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 240-447 |
| Cow position: | chr21:28993595-28993809 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 240-448 |
| Cow position: | chr21:5597176-5596962 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 35, 71 |
| Conread position: | 245-386 |
| Cow position: | chr21:41595736-41595590 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 245-424 |
| Cow position: | chr21:9353465-9353282 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 246-436 |
| Cow position: | chr21:35997194-35997001 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 247-351 |
| Cow position: | chr21:21140543-21140439 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 247-397 |
| Cow position: | chr21:40312781-40312933 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 247-436 |
| Cow position: | chr21:30150246-30150438 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 247-447 |
| Cow position: | chr21:34565193-34565396 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 0 |
Show alignments to all cow chromosomes.