Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 120-239 |
| Cow position: | chr22:14119092-14118970 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 122-231 |
| Cow position: | chr22:29868496-29868608 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr22:32221751-32221640 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-231 |
| Cow position: | chr22:43262567-43262455 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-238 |
| Cow position: | chr22:27669355-27669469 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-242 |
| Cow position: | chr22:15358359-15358232 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-242 |
| Cow position: | chr22:34675633-34675510 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-244 |
| Cow position: | chr22:22997590-22997460 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-245 |
| Cow position: | chr22:26941903-26941777 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-446 |
| Cow position: | chr22:26080791-26081149 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 122-447 |
| Cow position: | chr22:7979806-7979465 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 67, 261 |
| Conread position: | 123-230 |
| Cow position: | chr22:13274593-13274483 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-242 |
| Cow position: | chr22:17780618-17780739 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 113 |
| Conread position: | 124-423 |
| Cow position: | chr22:6566579-6566867 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 151, 57 |
| Conread position: | 124-447 |
| Cow position: | chr22:10683567-10683915 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 125-447 |
| Cow position: | chr22:27514745-27514414 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 126-231 |
| Cow position: | chr22:18486819-18486926 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 126-239 |
| Cow position: | chr22:23037641-23037757 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 126-327 |
| Cow position: | chr22:23730416-23730206 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 136-358 |
| Cow position: | chr22:32221703-32221481 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 141-242 |
| Cow position: | chr22:26376360-26376257 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 146-447 |
| Cow position: | chr22:31149478-31149179 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 152-422 |
| Cow position: | chr22:33917833-33918122 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 204 |
| Conread position: | 169-441 |
| Cow position: | chr22:44835677-44835398 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 198-448 |
| Cow position: | chr22:28179860-28179592 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 205-447 |
| Cow position: | chr22:5337605-5337848 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 207-436 |
| Cow position: | chr22:39452591-39452349 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 212-370 |
| Cow position: | chr22:9466600-9466435 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 221-438 |
| Cow position: | chr22:35520276-35520504 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 221-441 |
| Cow position: | chr22:7518403-7518172 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 225-424 |
| Cow position: | chr22:37554648-37554851 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 226-383 |
| Cow position: | chr22:33386533-33386692 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 227-421 |
| Cow position: | chr22:1590995-1590798 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 228-436 |
| Cow position: | chr22:27791435-27791227 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 232-421 |
| Cow position: | chr22:15666180-15665993 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 233-438 |
| Cow position: | chr22:19738605-19738816 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 195 |
| Conread position: | 233-447 |
| Cow position: | chr22:35382280-35382501 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 236-390 |
| Cow position: | chr22:41271036-41271191 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 236-421 |
| Cow position: | chr22:4017442-4017253 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 236-441 |
| Cow position: | chr22:4651145-4650937 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 236-447 |
| Cow position: | chr22:9155403-9155618 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 236-447 |
| Cow position: | chr22:33201457-33201237 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 237-438 |
| Cow position: | chr22:23618338-23618543 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 33, 190 |
| Conread position: | 238-404 |
| Cow position: | chr22:41245206-41245040 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 238-406 |
| Cow position: | chr22:23580880-23581043 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 239-418 |
| Cow position: | chr22:25221939-25222122 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 239-447 |
| Cow position: | chr22:44924100-44924312 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 240-363 |
| Cow position: | chr22:13057736-13057864 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 6, 125 |
| Conread position: | 240-389 |
| Cow position: | chr22:26376228-26376078 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 240-405 |
| Cow position: | chr22:24066277-24066440 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 240-419 |
| Cow position: | chr22:18608301-18608475 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 240-423 |
| Cow position: | chr22:5622758-5622943 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 240-424 |
| Cow position: | chr22:14118938-14118749 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-444 |
| Cow position: | chr22:11745947-11746153 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 240-444 |
| Cow position: | chr22:39293789-39293994 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 186, 119 |
| Conread position: | 240-447 |
| Cow position: | chr22:31497146-31497353 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 240-448 |
| Cow position: | chr22:11257787-11257987 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 240-448 |
| Cow position: | chr22:16251606-16251814 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 108 |
| Conread position: | 240-448 |
| Cow position: | chr22:39303043-39303257 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 62, 158 |
| Conread position: | 241-438 |
| Cow position: | chr22:22146190-22145987 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 241-447 |
| Cow position: | chr22:24126897-24126695 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 241-448 |
| Cow position: | chr22:26659012-26658804 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 244-438 |
| Cow position: | chr22:15398621-15398819 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 245-420 |
| Cow position: | chr22:25783969-25784148 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 245-436 |
| Cow position: | chr22:25714957-25714775 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 245-447 |
| Cow position: | chr22:25311596-25311796 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 245-448 |
| Cow position: | chr22:27224080-27223882 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 245-448 |
| Cow position: | chr22:45355333-45355135 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 246-427 |
| Cow position: | chr22:19040413-19040597 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 246-436 |
| Cow position: | chr22:7301880-7302082 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 246-438 |
| Cow position: | chr22:42605583-42605391 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 119 |
| Conread position: | 247-390 |
| Cow position: | chr22:15428495-15428636 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 247-406 |
| Cow position: | chr22:3064262-3064421 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 252-399 |
| Cow position: | chr22:16650251-16650403 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 252-447 |
| Cow position: | chr22:13274417-13274223 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 257-405 |
| Cow position: | chr22:10424277-10424427 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 287-448 |
| Cow position: | chr22:21936122-21935961 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 91 |
Show alignments to all cow chromosomes.